Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g01002 ATGGAGAATGGCCAAGAAATGTCGCTGAACCGGATGAAGAAATCAGTTGAGAATCTCGGATCTTCAGCAGAGGAGTACGGCGATCCGACTCTAATGAGGTTCTTGATTGCAAGATCAATGGACCCAGATAAGGCTGCGAAGATGTTTGTACAGTGGAAGAAATGGAGGGCAGTAATGGTTCCGAATGGGTATATTTCTGAATCTGAAATTGAAGACGAATTGGAGCCCAGGAAAATTTACTTGCAGGGTTTGTCAAGGCATGGAAACCCAGTGATGATCGTCAAAGCAAGCAAGCATTTTCCTTCTAAGGACCAACTCCAATTCAAGACTGTTGAATGTGTATCGTTTTGGAGTAAGGAAATCTTCATTTGCAGCTCTTTTGAAGGAAGAGAAATTGGAAATGAGAAGTTGATTGGGATTCTAGATCTGCACCAAATGTCTTATAAGAACATTGACGCCCGAGGGTTGATCACCGGATTTCAATTCTTACAATCTTACTATCCAGAGCGATTAGCCAAATGCTTCATCTTGAACATGCCGCGATTCTTTGTGAGCGTTTGGAGGATGGTTTCTCGGTTTCTCGAGAAAGCAACGCTGGAAAAGATTGTGATTGTGACGAACGAGGAAGAAAGTCTGGATTTCATAGAAGAAGTGGGAGAAGAAGTGTTGCCAGAAATATACGGAGGGGAAGCAAAGCTGGTGGCACTTCAAGATTTTGTTCTACCTGAGAGGCAGGCCATCCAAACCAAACAATGA 756 43.25 MENGQEMSLNRMKKSVENLGSSAEEYGDPTLMRFLIARSMDPDKAAKMFVQWKKWRAVMVPNGYISESEIEDELEPRKIYLQGLSRHGNPVMIVKASKHFPSKDQLQFKTVECVSFWSKEIFICSSFEGREIGNEKLIGILDLHQMSYKNIDARGLITGFQFLQSYYPERLAKCFILNMPRFFVSVWRMVSRFLEKATLEKIVIVTNEEESLDFIEEVGEEVLPEIYGGEAKLVALQDFVLPERQAIQTKQ 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15430867 15433104 + Bpe003307.2 Bpe10g01002 110124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g01002 251 Gene3D - 1 244 IPR036865 -
Bpe10g01002 251 PANTHER OS03G0850700 PROTEIN 1 242 - -
Bpe10g01002 251 SUPERFAMILY CRAL/TRIO domain 68 232 IPR036865 -
Bpe10g01002 251 Pfam CRAL/TRIO domain 77 229 IPR001251 -
Bpe10g01002 251 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 67 235 IPR001251 -
Bpe10g01002 251 SUPERFAMILY CRAL/TRIO N-terminal domain 4 65 IPR036273 -
Bpe10g01002 251 SMART sec14_4 73 232 IPR001251 -
Bpe10g01002 251 PANTHER SEC14 CYTOSOLIC FACTOR-LIKE 1 242 - -
Bpe10g01002 251 CDD SEC14 80 230 IPR001251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g01002 - - - qsu:112039703 364.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g01002 Bpe-Chr10:15430867 Bpe14g00819 Bpe-Chr14:6193762 6.58E-36 dispersed
Bpe10g01002 Bpe-Chr10:15430867 Bpe13g00832 Bpe-Chr13:14586203 2.16E-36 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g505 . . . . . Bpe10g01002 . Bma15g00025 Cmo04g01105 . Cma04g01034 Cma04g00080 Car04g00965 Car04g00080 Sed04g0300 . . Bhi07g00408 Tan04g1492 Cmetu10g0732 Lac13g1311 Hepe01g0602 . . Cla07g00528 Cam07g0570 Cec07g0617 Cco07g0593 Clacu07g0570 Cmu07g0607 Cre07g0940 . . . . Lsi04g01095 . . . Blo06g01032 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002811 1 3 1 1 1 2 3 2 2 2 2 2 1 2 2 2 2 0 2 2 2 2 2 2 2 1 2 4 3 1 56
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g01002 Bpe_Chr10 FPKM 6.086395 6.889961 34.617882 35.013149 96.193413 91.35762 99.531059 16.04669 16.959595 18.361567