Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g01008 ATGTTTGGGGAGAATGGTCTTTCATCTGGGGTTGAGCAGTCTCAGAGCAAGCTCTCTCGCCATGTTTCTGACCGGAATAGGGAAATCAAAGCTCAAAAAATGGGGGTTTCTGATAAAAACATAAATCCTTTCAAAGAACCTGACATATTTGCTCATGGGTTTCAATTAAAACCCTTCGAAATCGCTAATTCAAGCTCCAAGGAGCTTACTCTTACCCACCTTTGTGATAATTCTAAATTGGGTTTGCTCGAGAAAGTCAGCTGCAAAGGGAAAGAAGTTGTCATGTCTGACAGTTTCAATGGAGATAACAAATGGGCAGAGAGAGATTTCCTGAATCTATACGAGAAGAGAGAGACTTCGTCGAAACGAGACGTTGCAGAAGATGTTGAGAGAGAAAACAGAGCAAAGAGGCCAAAGCTTGAGACTTTAAATCTTTCACTAGCTTTACCTGATCCATCTCTTTCTCTCACCCCTTCAAATGCCATGCAAAATGAAGATCCAGCAGTTCCATCCAACCCTGCGAGGAGCATACAGTCTTTAGCCCCATCTAACAACAATACTAAAACCACATGTTCCAGTGATTTTACAGCTGCTTCGCCCTCGTACTCGTACTCCCATCCTTTTTCTCACAATCCCAGCTGCTCTTTGACACATAATTCAACTGAAAATTTTGATTGTCTGGCTGGTAGACACGATCAGATTTGGAATTGTGGAGAGGGGACAAACGGTTCTGTCCATAGTCGGTTTAAGCCATTGGGAGATAGGGTCACTTTATCCAATCATGGAGGTAGTCTTTTTTCGATGATGCAGGGTAATCGCATGGCGAACAAGGATTCTCATAATAATCAGAATTTACCCACTGGCTCAGATAGCCATTCCTTTTTTCCATCTGAGTTGCCTGCTAGACTAAGGATAGAAGCACCATCTGGGGATTCAAGAGGAAGAAATTCTGAGAGTTTGGGAGGATCGGAGGGTGTTGACATTGGGAGAGTAAGAAAGCCTTCTAGACCTGAGAGAATTCTTCATGAAATTGTTTTTGAATCAGTACATATTGCTAGTCAAACAATTCTGGAGCTGACGAGTGAAACACTGGCAGCAACAAAGAATTACCTAAAGAATCTAATTGAAATACCTGAAAATAGAGAGCAACTTGTAGCCCTGCAACGACAGCTAGGGCGAAGATCTGATCTTACGAAGGGAACTCTCTCAAAATGCCAGAAGGACCATCTGGAAATCTTGGTAGCCATAAAGATGGGACTAGGAAGCTTCATAAGCGGAAAAACATGCATCTCCTCTGCGGATCTGGTGGACATTTTCTTGCTTCTGAGATGCAGAAACTGCCGGAATGTAGTGCCTGTCGATGAATGCGACTGCAAGATTTGCTCATCAAACAAAGGATTCTGCAGCTCTTGCATGTGCCCTGTGTGTTTGAACTTCGATTGTGCAAACAACACTTGCAGTTGGGTCGGCTGTGATGTGTGCTCCCATTGGTGCCATGCTGCCTGTGGGATTCAGAAGAAATTTATAAGGCCAGGTCCGAGCTTGAAGGGAAGGATGGGGACGACCCAGATGCAATTTCACTGCATCGCTTGTGGCCATGCCTCGGAAATGTTTGGTTTTGTTAGGGATGTTGTCCTTTGCTGTGCTAAGGACTGGGGCCATGAAAGGTTGGCCAAAGAACTTGAGTGTGTGAAAAATATTTTCAGGGGAAGTGAAGATGTTAAAGACAAGGAATTGTTTTGTAAAGCTGAAGAGATGGCCTCAAAACTCAATAGTAGAATTATTTCTGCTCATGATGCCTGCGAGCTTATCATTCAGTTCTTTAACTCAGATGCGGATGCCATGTCAGATTTTTCGACTACAGATGCTACTCCTAAAGAGTCGTCGTGGGCAAAAACTGGCACTGTACAAAAAGAGATTGCCCCATTTCTTCAGTTGGGGTCGAAATCATTCCCATATACTCTTGATAAAATGAGGTCATTTAGTGAAAAAAGCGACCTACTTTTGAACGATCATCACCAAGCCGATAAGTTGTCCTTGAAAACTTTGTTGAAAAGCGAGGAGCTCGAGAGCATAGTGCGGATGAAGGAAGCGGAGGTGGGAATGTTCCAAAACAAGGCAGATGACGCAAGGAGAGAAGCAGAAGGATTGGAACAGATAATTAGTGCAAAAACTCGTAAACTGGATGAAGATTACGGGGAGAAGCTTGCTGAGTCAGACGAGAAGCGGAGGAAGAAAGTGGAGGAGCTGAAAGTTATGGAGGATGCTCACTTTTTTTATTTGAATATGAAGAGGAGAATGCAAAATGAGATCAGTGGTTTATTGCAGAGAATGGAGGCAACTAAGAATCAATTGCTCTGA 2361 43.37 MFGENGLSSGVEQSQSKLSRHVSDRNREIKAQKMGVSDKNINPFKEPDIFAHGFQLKPFEIANSSSKELTLTHLCDNSKLGLLEKVSCKGKEVVMSDSFNGDNKWAERDFLNLYEKRETSSKRDVAEDVERENRAKRPKLETLNLSLALPDPSLSLTPSNAMQNEDPAVPSNPARSIQSLAPSNNNTKTTCSSDFTAASPSYSYSHPFSHNPSCSLTHNSTENFDCLAGRHDQIWNCGEGTNGSVHSRFKPLGDRVTLSNHGGSLFSMMQGNRMANKDSHNNQNLPTGSDSHSFFPSELPARLRIEAPSGDSRGRNSESLGGSEGVDIGRVRKPSRPERILHEIVFESVHIASQTILELTSETLAATKNYLKNLIEIPENREQLVALQRQLGRRSDLTKGTLSKCQKDHLEILVAIKMGLGSFISGKTCISSADLVDIFLLLRCRNCRNVVPVDECDCKICSSNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCSHWCHAACGIQKKFIRPGPSLKGRMGTTQMQFHCIACGHASEMFGFVRDVVLCCAKDWGHERLAKELECVKNIFRGSEDVKDKELFCKAEEMASKLNSRIISAHDACELIIQFFNSDADAMSDFSTTDATPKESSWAKTGTVQKEIAPFLQLGSKSFPYTLDKMRSFSEKSDLLLNDHHQADKLSLKTLLKSEELESIVRMKEAEVGMFQNKADDARREAEGLEQIISAKTRKLDEDYGEKLAESDEKRRKKVEELKVMEDAHFFYLNMKRRMQNEISGLLQRMEATKNQLL 786
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15520303 15523353 + Bpe003313.1 Bpe10g01008 110130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g01008 786 Coils Coil 700 727 - -
Bpe10g01008 786 MobiDBLite consensus disorder prediction 1 35 - -
Bpe10g01008 786 Pfam Coiled-coil region of Oberon 681 775 IPR032535 -
Bpe10g01008 786 MobiDBLite consensus disorder prediction 306 331 - -
Bpe10g01008 786 MobiDBLite consensus disorder prediction 18 34 - -
Bpe10g01008 786 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 785 IPR004082 -
Bpe10g01008 786 Pfam PHD - plant homeodomain finger protein 445 565 IPR032881 -
Bpe10g01008 786 CDD PHD_OBE1_like 472 531 - -
Bpe10g01008 786 Coils Coil 764 784 - -
Bpe10g01008 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 435 456 IPR004082 -
Bpe10g01008 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 394 409 IPR004082 -
Bpe10g01008 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 409 424 IPR004082 -
Bpe10g01008 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 687 707 IPR004082 -
Bpe10g01008 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 479 499 IPR004082 -
Bpe10g01008 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 726 748 IPR004082 -
Bpe10g01008 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 355 377 IPR004082 -
Bpe10g01008 786 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 552 571 IPR004082 -
Bpe10g01008 786 MobiDBLite consensus disorder prediction 151 188 - -
Bpe10g01008 786 PANTHER PROTEIN OBERON 3 1 785 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g01008 - - - pper:18789922 901.738
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00031 Bpe-Chr3:539574 Bpe10g01008 Bpe-Chr10:15520303 0 dispersed
Bpe06g00621 Bpe-Chr6:17028589 Bpe10g01008 Bpe-Chr10:15520303 5.21E-12 dispersed
Bpe10g01008 Bpe-Chr10:15520303 Bpe15g00750 Bpe-Chr15:17900143 1.67E-77 dispersed
Bpe10g01008 Bpe-Chr10:15520303 Bpe10g00539 Bpe-Chr10:12450963 1.49E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g536 . . . . . Bpe10g01008 Bma14g01925 Bma15g00021 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0340 Cone9ag0374 . Csa05g01962 . . Blo06g01035 . Bda07g01736 . . . . . . . . Cma04g01801 . . . . . . . . . . . . . . . . . . . . . . Cme09g01299
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005873 3 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g01008 Bpe_Chr10 FPKM 20.777641 17.593586 5.860214 6.477057 8.259625 8.426216 6.737278 23.105463 17.444935 21.765791