Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g01010 ATGGCGGCCGCTTCTCTCTCCTCCTCTTCTCTTGTTAAGTGCCGTTCTACCTTCTCGCTAAAATCTCCGCCGAATCCTCTGCTGCCTCGCCTCATTACAGCCTCTCAGCTTTGTATTCATGTGAAAAATCCGGATAGACTTGTGGTGAATGCGTCGATCTCAGTTTCTGAACCTAATTTGAGGTCTCCTGTTTTGAACAAGAAGTCACAGAATCCAATTGTAGTCATTGACAACTACGACAGCTTCACCTACAACCTTTGTCAGTACATTGGAGAGTTGGGATGTCATTTTGAGGTTTATCGAAACGATGAATTAACGGTGGAGGATCTGAAGAGGAAAAATCCCAGGGGAGTGCTGATCTCACCAGGGCCTGGCACACCTCAGGACTCTGGGATATCACTGCAAACAGTGCTGGAACTCGGCCCTATTGTCCCTCTATTTGGTGTATGCATGGGTTTGCAGTGCATTGGAGAGGCTTTTGGAGGGAAAATTGTGCGTTCCCCTTTTGGTGTTATGCATGGAAAAAAGTCTCTCGTGTATTATGATGAGAAAGGAGAGGATGGGCTCTTCGCTGGCTTACAAAACCCTTTTGTTGCTGGCCGATATCATAGCCTAGTAATCGACAAGGAGAGTTTTCCTTCAGATGAACTAGAAATCACAGCATGGACAGAAGATGGACTGATAATGGCAGCTCGGCACAAGAGATATAAGCATATACAAGGAGTTCAGTTCCACCCAGAAAGTATTATAACAAGTGAAGGCAAGACAATCGTGCACAACTTTGTGAGGATGTTAGAGAGGAATGAAGCTGAGTAA 816 45.47 MAAASLSSSSLVKCRSTFSLKSPPNPLLPRLITASQLCIHVKNPDRLVVNASISVSEPNLRSPVLNKKSQNPIVVIDNYDSFTYNLCQYIGELGCHFEVYRNDELTVEDLKRKNPRGVLISPGPGTPQDSGISLQTVLELGPIVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKKSLVYYDEKGEDGLFAGLQNPFVAGRYHSLVIDKESFPSDELEITAWTEDGLIMAARHKRYKHIQGVQFHPESIITSEGKTIVHNFVRMLERNEAE 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15527382 15529927 - Bpe003315.1 Bpe10g01010 110132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g01010 271 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 72 271 - -
Bpe10g01010 271 CDD GATase1_Anthranilate_Synthase 73 262 IPR006221 -
Bpe10g01010 271 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 115 129 - -
Bpe10g01010 271 PRINTS Carbamoyl-phosphate synthase protein GATase domain signature 145 161 - -
Bpe10g01010 271 PANTHER ANTHRANILATE SYNTHASE BETA SUBUNIT 1, CHLOROPLASTIC 36 270 - -
Bpe10g01010 271 SUPERFAMILY Class I glutamine amidotransferase-like 73 266 IPR029062 -
Bpe10g01010 271 TIGRFAM trpG_papA: glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase 73 263 IPR006221 -
Bpe10g01010 271 Gene3D - 71 264 IPR029062 -
Bpe10g01010 271 PRINTS Anthranilate synthase component II signature 118 127 - -
Bpe10g01010 271 PRINTS Anthranilate synthase component II signature 171 179 - -
Bpe10g01010 271 PRINTS Anthranilate synthase component II signature 241 254 - -
Bpe10g01010 271 PRINTS Anthranilate synthase component II signature 145 156 - -
Bpe10g01010 271 PRINTS Anthranilate synthase component II signature 194 206 - -
Bpe10g01010 271 PRINTS Anthranilate synthase component II signature 73 87 - -
Bpe10g01010 271 PANTHER MULTIFUNCTIONAL TRYPTOPHAN BIOSYNTHESIS PROTEIN-RELATED 36 270 - -
Bpe10g01010 271 Pfam Glutamine amidotransferase class-I 74 262 IPR017926 -
Bpe10g01010 271 PRINTS Glutamine amidotransferase superfamily signature 241 254 - -
Bpe10g01010 271 PRINTS Glutamine amidotransferase superfamily signature 118 127 - -
Bpe10g01010 271 PRINTS Glutamine amidotransferase superfamily signature 145 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g01010 K01658 trpG; anthranilate synthase component II [EC:4.1.3.27] - mnt:21402235 407.912
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g01010 Bpe-Chr10:15527382 Bpe15g01063 Bpe-Chr15:19899034 2.01E-23 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g542 . . . . . Bpe10g01010 . Bma15g00019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g01037 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003870 1 2 1 1 1 2 1 4 3 0 2 2 1 1 1 1 2 1 1 4 1 3 1 1 1 1 1 2 1 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g01010 Bpe_Chr10 FPKM 20.35924 15.591079 21.0965 18.656487 18.825817 20.666006 21.246222 22.162949 21.623018 23.681482