Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g01011 ATAGCAATGCCATCGGGAAATATGATACTGCCTGATAATATGCCACTCCCGAGTGGTGGCGGCGGCGTAGTTGGTGGTGGCGCTAGTGGCGAAGTCCATCAGCATCACCTCCGGCAATGGTTTCCTGATGAACGGGACGGGTTTATTTCATGGTTGCGAGCTGAATTTGCTGCTGCAAATGCGATTATAGATTCACTGTGCCATCATTTGCGCGCAGTAGGTGAACGGGCCGAGTATGATGTAGTAATTGGTTGTATACAACAAAGGCGATGTAACTGGAACCCGATACTTCATATGCAGCAATACTTTTCTATAGCCGAGGTTGTTTATGCTCTTCAACAGGTCACTCTGAGGAGGCAGCAGAGGTATTTCGATCCCGTAAAGATGCCGAGCAAGGATTTAAGGAGGTTTCCAATGGGGTCTAAACAGAGTCATTGGGTGGAACACACAAATAAAGTGCAAGTTTCTAATGTAGAAGTTAAATCTGAGGGAGAGTTCGACAAATTTGGTGATAAAAGCTCAGCGTTAATGGAAGAGAAAAATGCAGATACTGTTGTAAAAGATCAAATGGATGACAAGCTGAAAAGTAAAGAAGTTGCTGTAGGACCAGCTGACAACACAGAGCCTCTTGGTGAAGGGGCAGGCGATGGACATAATTCAAGTCATGAAGAAAACAATTTAGAGTCCTTCCAAGATAAACCTGAGAAGCAGAGTGCTGTCATTGTGCCAAAAACTTTTGTCGCCCCTGAGATATTCGATGGAAAAACAATTAACGTGGTGGATGGACTCAAACTGTATGAAGAGTTGTTTGATGATGCTGAGGTTTCAAAACTTGTTTTGTCGGTAAATGATCTGAGGAGTGCGGGGAGAAAAGGACAATTGCCAGGCAATTGTGTTTTTGAACAAGGAGCAGATCAAACGTATGTGGTGTCAAAGAAGCCGTCGAAAGGACACGGTAGAGAGATGATTCAACTAGGTCTTACCATTGCAGATGCACCGGCTGATGATGAAAAAGCTACCGGAATGTCCAAAGATGGGAAAATCGAAGCCATTCCTTCCTCAATCCAAGATGTGATTGAACGCTTGGTTAACATGCAAGTAACAAATGTGAAGCCAAACTGTTGCATCATTGATTTCTATAACGAGGGTGATCACTCACAACCGCATGTGTTGCCTCCGTGGTATGGAAGGCCTGTTTGCATCCTATTTTTGACAGAATGTCAAATGTCTTTTGGCAGAGTAATTGGAATAGACCGTCCTGGAGATTTTAGAGGTTCTCTGAAACTTTCTCTTTCTTCTGGATCTCTGCTCGCGATGGAAGGAAACTCAACAGATTTTGCGAAACATGCCATCTATTCCAGTCGTAAGCAGCGGATACTTATTACTCTAACCAAGTCACAGCCAAAGAAATGTGATACCCCCAGCACTCCAAACTGGAGCCCATCTCCAAGCTGGTCTCCCAACCACATTCGGCATGCCATTGGACACAAGCGGTATCCAGCCATTCCAACCCCAGCCATTTTAGCACCGGCCCCACCCATTCACCCTCACATTGCGACTCCAAATGGCTTGACGCCTTTGTTTGTCCTCCCGCCTTCGGCAATGCCTTATCCTTCAGCGGTTCCTATCCCCTCTACTTCATCGGCATGGCCAGGTCCACCCCCTCCGAGGCATCCTTCTCCATCTCCATCTCTCCCCTTTTCTGGGACTGGAGTTTTTCTTCCACCCCCAGGTTCTGGAAATTCTACATCACCACAACCGATGTTGAGTTCTGCAAATGAAATGAACTTAGCAGGGGAGACACAAAATAGTGTGTCCGTAAATTCAAATCATTATACTAGCGCATCTCCAAAGGATCAACCTAATATAAAATCTCAAATGGAAGACTGCAATGGAAGCATTGAGGCAACATTGAGCAACGGAGCTGTGGCTATTGAAGAGAGCAAAGCGGAAAATGTATGA 1962 45.46 IAMPSGNMILPDNMPLPSGGGGVVGGGASGEVHQHHLRQWFPDERDGFISWLRAEFAAANAIIDSLCHHLRAVGERAEYDVVIGCIQQRRCNWNPILHMQQYFSIAEVVYALQQVTLRRQQRYFDPVKMPSKDLRRFPMGSKQSHWVEHTNKVQVSNVEVKSEGEFDKFGDKSSALMEEKNADTVVKDQMDDKLKSKEVAVGPADNTEPLGEGAGDGHNSSHEENNLESFQDKPEKQSAVIVPKTFVAPEIFDGKTINVVDGLKLYEELFDDAEVSKLVLSVNDLRSAGRKGQLPGNCVFEQGADQTYVVSKKPSKGHGREMIQLGLTIADAPADDEKATGMSKDGKIEAIPSSIQDVIERLVNMQVTNVKPNCCIIDFYNEGDHSQPHVLPPWYGRPVCILFLTECQMSFGRVIGIDRPGDFRGSLKLSLSSGSLLAMEGNSTDFAKHAIYSSRKQRILITLTKSQPKKCDTPSTPNWSPSPSWSPNHIRHAIGHKRYPAIPTPAILAPAPPIHPHIATPNGLTPLFVLPPSAMPYPSAVPIPSTSSAWPGPPPPRHPSPSPSLPFSGTGVFLPPPGSGNSTSPQPMLSSANEMNLAGETQNSVSVNSNHYTSASPKDQPNIKSQMEDCNGSIEATLSNGAVAIEESKAENV 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15537324 15542761 + Bpe003316.1 Bpe10g01011 110133

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g01011 653 MobiDBLite consensus disorder prediction 546 626 - -
Bpe10g01011 653 MobiDBLite consensus disorder prediction 181 235 - -
Bpe10g01011 653 MobiDBLite consensus disorder prediction 466 485 - -
Bpe10g01011 653 MobiDBLite consensus disorder prediction 181 199 - -
Bpe10g01011 653 Gene3D - 248 473 IPR037151 -
Bpe10g01011 653 MobiDBLite consensus disorder prediction 217 231 - -
Bpe10g01011 653 MobiDBLite consensus disorder prediction 547 563 - -
Bpe10g01011 653 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 2 641 IPR044842 GO:0003729|GO:0006402|GO:0032451
Bpe10g01011 653 MobiDBLite consensus disorder prediction 575 626 - -
Bpe10g01011 653 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 2 641 - -
Bpe10g01011 653 SUPERFAMILY Clavaminate synthase-like 346 463 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g01011 - - - pper:18788999 637.876
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00151 Bpe-Chr10:3560133 Bpe10g01011 Bpe-Chr10:15537324 5.23E-22 dispersed
Bpe10g00432 Bpe-Chr10:11740299 Bpe10g01011 Bpe-Chr10:15537324 6.21E-61 dispersed
Bpe10g01011 Bpe-Chr10:15537324 Bpe11g00202 Bpe-Chr11:1365384 1.03E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g543 . . . . . Bpe10g01011 . Bma15g00018 . . . Cma04g00036 . Car04g00042 . . . . . . . . . . . . . . . . . . . Cone6ag0337 Cone9ag0371 . . . . Blo06g01038 Blo11g00962 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005898 1 2 2 1 1 1 2 1 1 0 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g01011 Bpe_Chr10 FPKM 60.403809 71.456001 46.637718 50.149128 169.723587 179.176392 168.893616 63.376972 64.368622 64.546944