Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe10g01016 ATGGAGGAGGCCGGGGGAGAAGCCAGCAGTCCTAAACAGCGTCTCATTCTCAAGAGTTTTCTGACGCGGGAACAATGCAAGGAGCTGGAGTTCATCCACAAGAGCTGCAGCACTGTGGGTTACAGACCCTACGTCTTCTCCCTCACTCTTTCCCATCTCGCTGCCACCAATTCCCACCATTTGATTATGCCCTTCGTTCCCATCCGGGAGAGGTTGAAAGAGAAGGCCGAGGAGTTCTTCGGCTGTGAATATGAACTTTTCGTTGAGTTCACTGGCCTGATCAGCTGGAGTAAAGGGGCGAGCATTGGATGGCATAGTGATGATAACAGGAATTATCTTAAGCAACGTGATTTCACGGCAGTATGTTATCTAAATAGTCACGGAATAGATTTCAAAGGTGGATTATTACGCTTCCAGGATGGAGAGCCAAGAGTTATCACTCCTTTGTGTGGGGACGTTGTAATGTACACGACTGACAACCGCAACATGCATTCTGTTGACGAGATTACTGATGGGGAAAGACTCACTCTCTCTTTATGGTTCAGTCGTGATGGTGGTCATGATGAGGATGCAAAACTTGTTTCCATTCTCTCAAAAAGTGGATTTGTTGATAATTTTCCTGATCTATGTTTGCCTCTTCCTGCGTCCAGTAATATGTACTGGTTTTCATCAAACCAACCTTCTAATTTGGAGTTGGGTTTTGACATATGTTGGGCAAGACTTCACGTTCTTGGATATAGTATTTGTGTTTCTCAAGAAACTGGTTTTGAGTCAGATTTATCTGAGTTACTCATGAAGCCATTGCGATTAGCTACGAGAGATGAGCTGTTTGACGTTGAGTTCGTTAACATTTTGCACGCACTTCAGGTAGTGCAGTTTAAGTGTTGGAAAGCTTCTGAATCACATGCTTCTCAGAGAAGAGAAAATGCATCCAAGGTTCTGAGTCTATCACAACAGCACAGGGATGAAATTTTTTGCCTAAAAACTAGATTATGCAAGGATCTAGCAATGCCTGAGGCGGTTTTCGGCTGGGATGGCCAGAGGCAGGATACAGTTGATTGGGTCAAGCTTGATGCTGCAGTCTTGGCATGGAAAGAGTATACACATACGTTACAGAGTGAATTGCTTAGAAGCTTACCTCATTGGAGAGCTCATCAATCTATATTTGATGTTTCTTAA 1179 44.02 MEEAGGEASSPKQRLILKSFLTREQCKELEFIHKSCSTVGYRPYVFSLTLSHLAATNSHHLIMPFVPIRERLKEKAEEFFGCEYELFVEFTGLISWSKGASIGWHSDDNRNYLKQRDFTAVCYLNSHGIDFKGGLLRFQDGEPRVITPLCGDVVMYTTDNRNMHSVDEITDGERLTLSLWFSRDGGHDEDAKLVSILSKSGFVDNFPDLCLPLPASSNMYWFSSNQPSNLELGFDICWARLHVLGYSICVSQETGFESDLSELLMKPLRLATRDELFDVEFVNILHALQVVQFKCWKASESHASQRRENASKVLSLSQQHRDEIFCLKTRLCKDLAMPEAVFGWDGQRQDTVDWVKLDAAVLAWKEYTHTLQSELLRSLPHWRAHQSIFDVS 392
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15617768 15621095 - Bpe003322.3 Bpe10g01016 110138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe10g01016 392 PANTHER LEPRECAN 1 8 390 IPR039575 GO:0032963
Bpe10g01016 392 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 8 390 - -
Bpe10g01016 392 Pfam 2OG-Fe(II) oxygenase superfamily 97 181 IPR044862 -
Bpe10g01016 392 SMART p4hc 12 182 IPR006620 GO:0005506|GO:0016705|GO:0031418
Bpe10g01016 392 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 75 183 IPR005123 -
Bpe10g01016 392 Gene3D q2cbj1_9rhob like domain 10 199 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe10g01016 - - K08134 pmum:103320983 505.753
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g544 . . . . . Bpe10g01016 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g01043 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009043 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe10g01016 Bpe_Chr10 FPKM 0.0 0.0 0.0 0.0 10.945815 12.094123 13.069514 0.0 0.0 0.0