Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00010 ATGGCACTAGTCAAAGAACTACGCATGGGTTTAGCTCAATCTGCCGACCTATCTTCTCAAAGCTCCCATGAAAGTGCAGCAGAAATGGAAAAAAATGGTGGGTTTTCGAAGAATACTGGTTTTTTGTTCCGCAGTTCGATCTACAAACCAGAAATTTCTCGGTCTGTGATAAACTTCAAGGAGCAGGTCGATCGGAATCTAACCCAGTTAAGTATGGAATCATCTTTACTGAGTTTTGGCCAAACCCACCGGTTTGCTCAAGAAGACTATTTCGACTGGCCAGCAGAAGAAGAAAGCTTTAACAATGGCTGTCAATTGAGCCAGATGATCAGCTCTTCTAACCTACGCCTTTTGGACGACTTAAACTGCTTTCAGAAAGCTTCCAGCTTTACTCCCATGACGATTCCTTCAAAAGAAAATCAAAACGGATCAGATGGGTCCAATAATTATTGGCTATATTCTGAAGAATCAGATGTTATTGGTGAAGAGGAGTCAAGAACTGATCTTGAACTAACCCCACAGAAACGACCCCATCTGGGGGAAAGCGAGCAAACTATGAAGAAGCAATGCAATAGTTCAACTAAGAAGACAAAACCAAAGACAAATCCAGCCAAAGATCCGCAAAGTATAGCAGCAAAGAATCGACGAGAGCGGATTAGTGAGAGATTGAAGATTCTGCAAGAACTAGTTCCAAATGGATCCAAGGTTGATTTGGTAACTATGCTGGAGAAAGCAATTAACTACGTCAAATTTCTGCAGCTTCAGGTGAAGATATTGGCGACAGATGAATTCTGGCCAGTTCAAGGAGGGAAAGCTCCTGATATTTCTCAAGTGAGGGACGCCATTGATGCAATTCTTCCTTCACAAAGAGAGAGAAGCTCAAGCTCAAACAGTACAAAGTAA 903 42.08 MALVKELRMGLAQSADLSSQSSHESAAEMEKNGGFSKNTGFLFRSSIYKPEISRSVINFKEQVDRNLTQLSMESSLLSFGQTHRFAQEDYFDWPAEEESFNNGCQLSQMISSSNLRLLDDLNCFQKASSFTPMTIPSKENQNGSDGSNNYWLYSEESDVIGEEESRTDLELTPQKRPHLGESEQTMKKQCNSSTKKTKPKTNPAKDPQSIAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAINYVKFLQLQVKILATDEFWPVQGGKAPDISQVRDAIDAILPSQRERSSSSNSTK 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 75226 76596 + Bpe003389.1 Bpe11g00010 110155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00010 300 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 262 IPR036638 GO:0046983
Bpe11g00010 300 MobiDBLite consensus disorder prediction 184 208 - -
Bpe11g00010 300 SMART finulus 209 258 IPR011598 GO:0046983
Bpe11g00010 300 MobiDBLite consensus disorder prediction 162 215 - -
Bpe11g00010 300 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 293 - -
Bpe11g00010 300 Pfam Helix-loop-helix DNA-binding domain 210 253 IPR011598 GO:0046983
Bpe11g00010 300 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 203 252 IPR011598 GO:0046983
Bpe11g00010 300 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 293 - -
Bpe11g00010 300 MobiDBLite consensus disorder prediction 164 183 - -
Bpe11g00010 300 CDD bHLH_AtIND_like 204 266 - -
Bpe11g00010 300 Gene3D - 197 260 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00472 Bpe-Chr5:19025974 Bpe11g00010 Bpe-Chr11:75226 7.55E-27 dispersed
Bpe11g00010 Bpe-Chr11:75226 Bpe11g01227 Bpe-Chr11:9172418 1.19E-157 dispersed
Bpe11g00010 Bpe-Chr11:75226 Bpe02g01776 Bpe-Chr2:20088959 1.41E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21998 PF00010 HLH 6.10E-08 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00010 - - tcc:18601899 247.284