Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bpe11g00042 | ATGGGTTCGGTTTGCTGCTGTTTAAGTGTAGAAGATTTTGAAGATTATGTTAATCCAAACAATTCTGCATATAGGAACTGTATATGTCTTCGTTGCTTCATTCGTAACTTCCTAAATGTGTATACCTCAGTTTTCAGAAGAGGAGAAGTGCATTCCTTATCTTCATCAATTCAAGGGGCTTCATCTTTAACTTCGTCTGCATCTTTCAACAACTCCTTGTCTGATATGTATCATTCCCCCCCGAGGCCATTGCCTTATGAGTCTGACCAGAGATATGTACGGTTGCAACGTGATGGACTAGTTTCGAGGCACGACAAGGGCTCGAGCCTCTTACACGAAGATTCAGAGCCTCTGAGAAATGAAATTGATATTGATACCGAGCCTTTGAGAACCGCAGACAAGTTGAATGGATCTACCGGTGAAGATGAATCGAAAGATGACTTGAGGAAGTCATCGTTTAAGTTCTCTTCAGTTGGGAAATTTTATATGTTTACGGAAGATGAGGATGTTTGTCCCACCTGTCTTGAAGAATATACTCCAGAAAATCCCAAGATAATGACCAAATGCTCTCATCATTTTCACCTCGGATGTATTTACGAGTGGATGGAAAGAAGTGAAAGCTGTCCGGTTTGTGGCCAGGTA | 642 | 41.43 | MGSVCCCLSVEDFEDYVNPNNSAYRNCICLRCFIRNFLNVYTSVFRRGEVHSLSSSIQGASSLTSSASFNNSLSDMYHSPPRPLPYESDQRYVRLQRDGLVSRHDKGSSLLHEDSEPLRNEIDIDTEPLRTADKLNGSTGEDESKDDLRKSSFKFSSVGKFYMFTEDEDVCPTCLEEYTPENPKIMTKCSHHFHLGCIYEWMERSESCPVCGQV | 214 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 302999 | 304394 | + | Bpe024730 | Bpe11g00042 | 110187 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bpe11g00042 | 214 | ProSiteProfiles | Zinc finger RING-type profile. | 171 | 211 | IPR001841 | - | |
| Bpe11g00042 | 214 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 214 | - | - | |
| Bpe11g00042 | 214 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 148 | 214 | IPR013083 | - | |
| Bpe11g00042 | 214 | MobiDBLite | consensus disorder prediction | 104 | 148 | - | - | |
| Bpe11g00042 | 214 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 214 | - | - | |
| Bpe11g00042 | 214 | Pfam | Ring finger domain | 170 | 211 | IPR001841 | - | |
| Bpe11g00042 | 214 | SMART | ring_2 | 171 | 211 | IPR001841 | - | |
| Bpe11g00042 | 214 | SUPERFAMILY | RING/U-box | 164 | 213 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bpe02g01427 | Bpe-Chr2:17702522 | Bpe11g00042 | Bpe-Chr11:302999 | 2.61E-108 | dispersed | |
| Bpe11g00042 | Bpe-Chr11:302999 | Bpe11g00660 | Bpe-Chr11:5072254 | 4.73E-24 | dispersed | |
| Bpe14g00823 | Bpe-Chr14:6213414 | Bpe11g00042 | Bpe-Chr11:302999 | 3.75E-60 | transposed | |
| Bpe11g00042 | Bpe-Chr11:302999 | Bpe11g01184 | Bpe-Chr11:8787907 | 2.53E-114 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bpe11g00042 | - | - | mnt:21401143 | 313.153 |