Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00042 ATGGGTTCGGTTTGCTGCTGTTTAAGTGTAGAAGATTTTGAAGATTATGTTAATCCAAACAATTCTGCATATAGGAACTGTATATGTCTTCGTTGCTTCATTCGTAACTTCCTAAATGTGTATACCTCAGTTTTCAGAAGAGGAGAAGTGCATTCCTTATCTTCATCAATTCAAGGGGCTTCATCTTTAACTTCGTCTGCATCTTTCAACAACTCCTTGTCTGATATGTATCATTCCCCCCCGAGGCCATTGCCTTATGAGTCTGACCAGAGATATGTACGGTTGCAACGTGATGGACTAGTTTCGAGGCACGACAAGGGCTCGAGCCTCTTACACGAAGATTCAGAGCCTCTGAGAAATGAAATTGATATTGATACCGAGCCTTTGAGAACCGCAGACAAGTTGAATGGATCTACCGGTGAAGATGAATCGAAAGATGACTTGAGGAAGTCATCGTTTAAGTTCTCTTCAGTTGGGAAATTTTATATGTTTACGGAAGATGAGGATGTTTGTCCCACCTGTCTTGAAGAATATACTCCAGAAAATCCCAAGATAATGACCAAATGCTCTCATCATTTTCACCTCGGATGTATTTACGAGTGGATGGAAAGAAGTGAAAGCTGTCCGGTTTGTGGCCAGGTA 642 41.43 MGSVCCCLSVEDFEDYVNPNNSAYRNCICLRCFIRNFLNVYTSVFRRGEVHSLSSSIQGASSLTSSASFNNSLSDMYHSPPRPLPYESDQRYVRLQRDGLVSRHDKGSSLLHEDSEPLRNEIDIDTEPLRTADKLNGSTGEDESKDDLRKSSFKFSSVGKFYMFTEDEDVCPTCLEEYTPENPKIMTKCSHHFHLGCIYEWMERSESCPVCGQV 214
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
11 302999 304394 + Bpe024730 Bpe11g00042 110187
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00042 214 ProSiteProfiles Zinc finger RING-type profile. 171 211 IPR001841 -
Bpe11g00042 214 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 214 - -
Bpe11g00042 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 214 IPR013083 -
Bpe11g00042 214 MobiDBLite consensus disorder prediction 104 148 - -
Bpe11g00042 214 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 214 - -
Bpe11g00042 214 Pfam Ring finger domain 170 211 IPR001841 -
Bpe11g00042 214 SMART ring_2 171 211 IPR001841 -
Bpe11g00042 214 SUPERFAMILY RING/U-box 164 213 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01427 Bpe-Chr2:17702522 Bpe11g00042 Bpe-Chr11:302999 2.61E-108 dispersed
Bpe11g00042 Bpe-Chr11:302999 Bpe11g00660 Bpe-Chr11:5072254 4.73E-24 dispersed
Bpe14g00823 Bpe-Chr14:6213414 Bpe11g00042 Bpe-Chr11:302999 3.75E-60 transposed
Bpe11g00042 Bpe-Chr11:302999 Bpe11g01184 Bpe-Chr11:8787907 2.53E-114 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00042 - - mnt:21401143 313.153