Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00052 ATGCTTGTCCTGAAGCACTTCTTGTTTCTCTGTTTCTTTTCAATCTCTCTGATTGATGCTGTTCTTTGCAACTCCGATAAATCAGTGCTTCTTCAGTTCAAGAACTCGGTTTCTGATCCATCGGGATTGCTCTCGAGCTGGAGCTCTATCAATCCTGATCACTGTTCTTGGTTTGGCGTCTCTTGCGACTCCAATTTTCGCGTCGTCTCACTCAATATTTCTGGTAGTGGCAACAGAGGTAACTCCAGTGCTTTTTCGTGCTCTGATTTTACTAAATTCCCGCTTTATGGGTTAGATATTCGGAGGACGTGTGGGGGAAATGGTGGAATATTGGTTGGGAATCTATCGCCAATTATTGGAAGTCTGCGCGAGCTTAGGATTTTGTCACTGCCTTTTAATGGTTTTGAAGGTGAAGTACCTGATGAAATTTGGGGTTTAGAGAACTTAGAAGTTCTTGATCTAGAAGACAATTTGATATCTGGGTTACTTCCGAAACATCTAACAGTTTTGAACAATCTGCGGGTTCTTAACCTCGCCTTTAATAAAATCGAGGGTGGTTTTCCTAGTTGGCTGGGCTATTCTCTGCGTTTAGAGGTCTTAAATTTAGCCGGGAATCAATTGAATGGGACGACTCCGGGGATGGTTGGTCGTATGAAAGCTGTTTATTTGTCATTCAATTGGCTAACTGGGTCTATTCCAATCGAACTAGGGGAAAACTGTGAGAAGCTAGAGCACCTAGACTTGTCAGGTAATTACTTAGTCCACAGGATTCCAAGTAGTTTGGGAAATTGCAGTAAGTTAAGGACTCTATTGCTTTACTCAAATATGTTGGAAGAGAGTATACCCTCTGAACTTGGGCAGCTTAAGAAGCTTGAGGTGTTTGATGTTTCTAGGAACAGCCTCAGCGGTGCAATACCCCACGAGCTGGGAAATTGTGTTGAATTGTCTGTTCTTGTACTTTCCAATCTGTTTGATCCATTACCTTGGATCAAAAACACTGAAGGGAACTTTCCGTTGGAGGAAATGAGTAATGATGAATTTAATTTCTTTCAAGGTGCAATGCCTATGGAAATTGCTATGCTTCCAAAACTGAGGATTTTGTGGGCGCCAGGGGCAAGCCTGGAGGGTGATTTCCCCAGCAACTGGGGTAGCTGTGAAAACTTACAGATGGTGAGCTTGGCTCAGAATTTCCTCTCTGGAAAATTTCCTCAAAGCCTTAGTCGTTGTAAGAAGCTACAATTTCTTGATCTGAGCAGTAATAAGCTTTCTGGGGAACTCGACGTAGAACTTTCAGTACCTTGCATGAGATTGTTTGACATCAGTAAGAACCATTTATCAGGTCCTATTCCTAGATTTGTAAACAGCTCATGCCTTTCTTTTACCGCCTTTAATGAGCATGCTTCTGAATCGGACAATCCATCCTCTGTATATGTATCATTTTTTGAAACTAAGATGCGGGCGGCAGTTGATTTTCATTTTGTCAAACATGATGACTTTGTGGTTTTTCACAACTTTGGGCAGAATAATTTCACTGGCGGTTTCCAAAATATGCCTATTGCTCCTGAAAAATTAGGAAGACAGACTGCTTATGCGTATCTTGCCGGAGAAAACAAGCTTACCGGACCTTTTCCTGGAAACTTATTTGAAAATTGTCGTGGATTGGGGGCGTTGATAGTTAATGTTAGCTATAACAGAATATCTGGTCAGATTCCTAGTCACATTGGTAAAATGTGCAGCTCCTTAAAATATTTGGATGCATCTGGAAATCAAATTAGTGGGCCAATCAGCACGAGTTTTGGTGATATGGTATCTCTTGACGAACTGAACCTTAGTCGGAATATGTTGGAAGGTCGCATTCCAGCCAGCCTTGGTCAGATAACATATCTGAGATACCTTTCTTTGGCTAATAATCGCTTAAATGGCTCCATTCCTTCCAGCTTGGGGCGGTTGCAGGCATTAAAAAGGCTAGATCTTTCTTCCAACTCTCTTGTTGACATAATTCCGAATGATCTTGTAAACTTGAGGAATCTGACTGTTCTCCTACTCACGAACAATAATCTATCAGGGCAGATTCCTTCTGATTTGGCAAATGTGACCACTCTCTCGGTCTTCAATGTGTCGTTCAATAATTTGTCTGGGTCCCTGCCTTTGGATAACAACTTCATGAAATGCAATAGTGCTCTTGGAAATCCGCATGTAGTTTCTTGTCCTGTTTCTAATCTGATGGTGTCATCATCCACTGCACAAGGAAGTGATGGCGATGCAAGTAATTATGCAGCTTCACCACCCGGAACTGTAACCCAGACAAGTGGAGGTAATGGCTTTAATTCAATTGAGATTGCATCCATAACTTCTGCATCGGCCATTGTCTCGGTTCTTCTAGCTTTGATCGTTCTTTTCTTTTATACCCGAAAATGGAACCCCAAATCTAAAGTTCTTGCTGTGACTAGAAAGGAAGTGACAGTTTTCACAGACATTGGGATTCCTCTGAACTTCGACAGCGTCGTGAGGGCGACAGGAAACTTCAACACAGGTAATTGCATCGGCAGTGGAGGTTTTGGGGCGACCTACAAAGCGGAGATCTCTACCGGAGTTCTAGTGGCCATAAAACGACTTTCTGTTGGCCGATTTCAGGGAGTTCAACAGTTCCATGCAGAGATCAAGATTCTCGGGAGGTTTCACCATCCAAATCTCGTCACTCTAATCGGCTATCATGCAAGTGAGACGGAGATGTTTCTGATATACAATTACTTGCCTGGTGGTAATTTGGAGAAATTCATCCAGGAAAGATCAACTAGGGCCGTACATTGGAGAATTCTTCACAAAATTGCATTAGACATAGCCCGTGCACTTGCCTACCTTCATGATCAATGTGTGCCACGTGTCCTCCATCGAGACGTCAAGCCGAGTAATATCTTGTTAGATGACGAACTCAATGCATATCTATCCGATTTTGGATTGGCTAGGCTATTGGGTACTTCCGAAACACATGCCACTACGGGTGTGGCCGGAACTTTTGGGTACGTTGCTCCTGAATATGCAATGACTTGCCGTGTCTCGGACAAGGCCGATGTCTATAGTTATGGAGTGGTGCTACTTGAGTTGCTTTCTGACAAGAAAGCTCTTGATCCTTCGTTTTCGCCTTACGGAAATGGCTTCAACATAGTTGCTTGGGCCATTATGCTTCTAAGGCAGGGCCAGGCTAAAGAGTTCTTTACGGCCGGACTATGGGATGTAGGTCCTCATGATGATTTGGTCGAAGTATTGCACTTGGCTGTGATTTGTACCGTCGATTCTCTCTCGACAAGACCGACAATGAAGCAAGTTGTGAGACGCCTCAAGCAACTTCAACCGCCCTCATGTTAA 3366 43.23 MLVLKHFLFLCFFSISLIDAVLCNSDKSVLLQFKNSVSDPSGLLSSWSSINPDHCSWFGVSCDSNFRVVSLNISGSGNRGNSSAFSCSDFTKFPLYGLDIRRTCGGNGGILVGNLSPIIGSLRELRILSLPFNGFEGEVPDEIWGLENLEVLDLEDNLISGLLPKHLTVLNNLRVLNLAFNKIEGGFPSWLGYSLRLEVLNLAGNQLNGTTPGMVGRMKAVYLSFNWLTGSIPIELGENCEKLEHLDLSGNYLVHRIPSSLGNCSKLRTLLLYSNMLEESIPSELGQLKKLEVFDVSRNSLSGAIPHELGNCVELSVLVLSNLFDPLPWIKNTEGNFPLEEMSNDEFNFFQGAMPMEIAMLPKLRILWAPGASLEGDFPSNWGSCENLQMVSLAQNFLSGKFPQSLSRCKKLQFLDLSSNKLSGELDVELSVPCMRLFDISKNHLSGPIPRFVNSSCLSFTAFNEHASESDNPSSVYVSFFETKMRAAVDFHFVKHDDFVVFHNFGQNNFTGGFQNMPIAPEKLGRQTAYAYLAGENKLTGPFPGNLFENCRGLGALIVNVSYNRISGQIPSHIGKMCSSLKYLDASGNQISGPISTSFGDMVSLDELNLSRNMLEGRIPASLGQITYLRYLSLANNRLNGSIPSSLGRLQALKRLDLSSNSLVDIIPNDLVNLRNLTVLLLTNNNLSGQIPSDLANVTTLSVFNVSFNNLSGSLPLDNNFMKCNSALGNPHVVSCPVSNLMVSSSTAQGSDGDASNYAASPPGTVTQTSGGNGFNSIEIASITSASAIVSVLLALIVLFFYTRKWNPKSKVLAVTRKEVTVFTDIGIPLNFDSVVRATGNFNTGNCIGSGGFGATYKAEISTGVLVAIKRLSVGRFQGVQQFHAEIKILGRFHHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVHWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDELNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSPYGNGFNIVAWAIMLLRQGQAKEFFTAGLWDVGPHDDLVEVLHLAVICTVDSLSTRPTMKQVVRRLKQLQPPSC 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 392517 395882 - Bpe003432.1 Bpe11g00052 110197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00052 1121 SUPERFAMILY L domain-like 535 720 - -
Bpe11g00052 1121 SMART serkin_6 842 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g00052 1121 Gene3D Transferase(Phosphotransferase) domain 1 918 1118 - -
Bpe11g00052 1121 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 6 1120 - -
Bpe11g00052 1121 ProSitePatterns Serine/Threonine protein kinases active-site signature. 962 974 IPR008271 GO:0004672|GO:0006468
Bpe11g00052 1121 PRINTS Leucine-rich repeat signature 650 663 - -
Bpe11g00052 1121 PRINTS Leucine-rich repeat signature 412 425 - -
Bpe11g00052 1121 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Bpe11g00052 1121 Gene3D Phosphorylase Kinase; domain 1 805 917 - -
Bpe11g00052 1121 SUPERFAMILY L domain-like 347 453 - -
Bpe11g00052 1121 Gene3D Ribonuclease Inhibitor 219 338 IPR032675 -
Bpe11g00052 1121 Gene3D Ribonuclease Inhibitor 501 747 IPR032675 -
Bpe11g00052 1121 SUPERFAMILY L domain-like 24 323 - -
Bpe11g00052 1121 CDD STKc_IRAK 848 1116 - -
Bpe11g00052 1121 Gene3D Ribonuclease Inhibitor 339 475 IPR032675 -
Bpe11g00052 1121 Gene3D Ribonuclease Inhibitor 22 218 IPR032675 -
Bpe11g00052 1121 SMART LRR_typ_2 146 169 IPR003591 -
Bpe11g00052 1121 SMART LRR_typ_2 240 264 IPR003591 -
Bpe11g00052 1121 SMART LRR_typ_2 288 312 IPR003591 -
Bpe11g00052 1121 SMART LRR_typ_2 602 626 IPR003591 -
Bpe11g00052 1121 SMART LRR_typ_2 674 697 IPR003591 -
Bpe11g00052 1121 SMART LRR_typ_2 650 673 IPR003591 -
Bpe11g00052 1121 SMART LRR_typ_2 170 194 IPR003591 -
Bpe11g00052 1121 Pfam Protein kinase domain 844 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g00052 1121 ProSitePatterns Protein kinases ATP-binding region signature. 848 870 IPR017441 GO:0005524
Bpe11g00052 1121 Pfam Leucine rich repeat 628 687 IPR001611 GO:0005515
Bpe11g00052 1121 Pfam Leucine rich repeat 123 183 IPR001611 GO:0005515
Bpe11g00052 1121 SUPERFAMILY Protein kinase-like (PK-like) 827 1113 IPR011009 -
Bpe11g00052 1121 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515
Bpe11g00052 1121 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 6 1120 - -
Bpe11g00052 1121 ProSiteProfiles Protein kinase domain profile. 842 1116 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00052 Bpe-Chr11:392517 Bpe03g00294 Bpe-Chr3:3991704 1.51E-16 dispersed
Bpe02g02314 Bpe-Chr2:23803620 Bpe11g00052 Bpe-Chr11:392517 0 transposed
Bpe08g00761 Bpe-Chr8:9331582 Bpe11g00052 Bpe-Chr11:392517 8.77E-08 transposed
Bpe11g00052 Bpe-Chr11:392517 Bpe11g01426 Bpe-Chr11:10605800 4.00E-14 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63555 PF00069 Pkinase 1.60E-44 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00052 - - zju:107415929 1545.02