Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00081 ATGGAAATAGCTACAATGGAGAGTACTACGAAGTCGATGGAGGGTGGGGAAGATCGGACGGCGACCGGAGTTCTACCGATCAAGCCTTTACCCTTCAGCAACGGTCTTTCAAAGAGGCATAATCGTCTTAATCATGATAATAATCAGGACAAGCTCAACTCCGCCGCTAACTCCGCCGTTTCCTACAAAGAATGCCTGAAAAACCATGCGGCTAGCATAGGAGCTCACGCTTTAGATGGGTGTGGAGAATTCATTCCTTCTCCTTCTGCAACTTCTTCCGATCCCACCTCTTTAAAATGCGCCGCTTGCGGATGTCACCGGAACTTCCACCGCCGCGAGCCTGACGAGCCGATTTTTCCGGCCCCAACAACACAAGTAATCGAGTACCAGCCTCACCACCGCCACCACCCGCCTCCACCCCCTCAGCCAATCAGCCGGAGTCTGAACTCGGCGTCGCCTCCGCCGATCTCGTCTTCCTACTACCCCTCAGCTCCCCACATGCTTCTGGCTCTATCATCAGGGCTATCGGCCCCTCCGGATCCGACTAATCAGTTCTCGAATGGTCGGAAACGATTCAGAACCAGATTCAGCCTGGATCAGAAAGAGAAAATGCACCAGTTTGCCGAGAGAGTTGGGTGGAGGATGCATAAGAGAGACGAAGAACTGGTTCAAGGATTCTGCAATGAAATTGGCGTAGAAAAAGGGGTTTTTAAAGTATGGATGCACAATAACAAAAACTCATCTAGCAAGAAGGACGTTAATGGCGGAACGAATACTCTAGAACTCGCTGAAAACGACAACAACTTCGTCGGAAATCTCAATCGCTACGACGACGATGAAAGGGTACATCCCGCCATTAATGGGTCTTCTTCTTCTTCCTGA 882 50.45 MEIATMESTTKSMEGGEDRTATGVLPIKPLPFSNGLSKRHNRLNHDNNQDKLNSAANSAVSYKECLKNHAASIGAHALDGCGEFIPSPSATSSDPTSLKCAACGCHRNFHRREPDEPIFPAPTTQVIEYQPHHRHHPPPPPQPISRSLNSASPPPISSSYYPSAPHMLLALSSGLSAPPDPTNQFSNGRKRFRTRFSLDQKEKMHQFAERVGWRMHKRDEELVQGFCNEIGVEKGVFKVWMHNNKNSSSKKDVNGGTNTLELAENDNNFVGNLNRYDDDERVHPAINGSSSSS 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 544671 545552 + Bpe003460.1 Bpe11g00081 110226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00081 293 MobiDBLite consensus disorder prediction 274 293 - -
Bpe11g00081 293 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 27 271 - -
Bpe11g00081 293 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 27 271 - -
Bpe11g00081 293 Gene3D - 180 251 - -
Bpe11g00081 293 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 62 113 IPR006456 -
Bpe11g00081 293 MobiDBLite consensus disorder prediction 1 48 - -
Bpe11g00081 293 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 62 113 IPR006456 -
Bpe11g00081 293 SUPERFAMILY Homeodomain-like 179 248 IPR009057 -
Bpe11g00081 293 Pfam ZF-HD protein dimerisation region 60 114 IPR006456 -
Bpe11g00081 293 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 189 246 IPR006455 -
Bpe11g00081 293 MobiDBLite consensus disorder prediction 130 159 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00081 - - - qsu:112022185 324.709
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe11g00081 Bpe11g01458 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00081 Bpe-Chr11:544671 Bpe14g00177 Bpe-Chr14:2140419 1.67E-89 dispersed
Bpe11g00081 Bpe-Chr11:544671 Bpe11g01458 Bpe-Chr11:10824731 1.90E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g1541 Blo10g00133 Blo11g00585 . . . . . Bma13g00147 . . . . . . . . Cpe13g00949 . . . . . . . Cla10g01433 Cam10g1180 Cec10g1514 Cco10g1496 Clacu10g1493 Cmu10g2256 Cre10g1638 . . Cone6ag0586 . . Csa05g02448 . . . . Bda07g01353 Bda12g00161 Bpe11g00081 Bpe11g01458 . Bma02g00421 . . Cmo15g00285 . Cma15g00271 . Car15g00270 . . . . . . . . . . . . . . . . . . Chy09g00254 Cme09g00278
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe02g00132 . 1 242 ZF-HD Transcription Factor Family AT4G24660 53.3 2.8e-59 225.3
Bpe06g00095 . 1 229 ZF-HD Transcription Factor Family AT4G24660 52.5 1.5e-55 213.0
Bpe02g01693 . 92 286 ZF-HD Transcription Factor Family AT4G24660 52.3 2.6e-44 175.6
Bpe14g00177 . 24 263 ZF-HD Transcription Factor Family AT5G39760 53.4 9.2e-51 197.6
Bpe13g00443 BCT 137 329 ZF-HD Transcription Factor Family AT2G18350 51.0 1.1e-48 190.3
Bpe06g00095 . 42 233 ZF-HD Transcription Factor Family AT5G65410 54.7 3.8e-50 195.3
Bpe02g00132 . 50 246 ZF-HD Transcription Factor Family AT5G65410 53.7 1.5e-46 183.3
Bpe11g01458 BCT 60 245 ZF-HD Transcription Factor Family AT1G69600 53.5 3.9e-51 198.4
Bpe11g00081 BCT 24 256 ZF-HD Transcription Factor Family AT5G15210 53.2 3.1e-49 192.2
Bpe14g00177 . 10 242 ZF-HD Transcription Factor Family AT5G15210 56.1 7.0e-49 191.0
Bpe07g00043 . 1 183 ZF-HD Transcription Factor Family AT1G14440 51.3 3.6e-41 165.6
Bpe14g00177 . 16 245 ZF-HD Transcription Factor Family AT3G28920 61.4 1.4e-56 216.9
Bpe11g00081 BCT 1 281 ZF-HD Transcription Factor Family AT3G28920 51.4 3.4e-55 212.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22004 PF04770 ZF-HD_dimer 1.10E-28 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00081 Bpe_Chr11 FPKM 0.0 0.0 0.409865 0.361164 1.905887 0.0 0.480861 0.280868 0.0 0.452045