Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00093 ATGAGTTGCCAGACGACTGAATGTGAATCGTCTTTTTACTACTTATTGGAATTTGCTTCTGATAATGATGTTGAAGGTTTTAAACGTCTGATAGATTATGATGCTTCTTTCATCAATAAGTCTGGACTATGGTATGTCCGTCGAAATGGCTCAAAACAGGTTGTACAGGAGGATAGAACTCCACTAATGGTTGCTGCTACCTATGGTAGTGTAAATGTCTTGAAGCTTTTATTGTCATATCCTGAGATTGATGTAAATCTCTCATCTGGCGTGGATAGAAGCACGGCTCTTCATTGTGCTGCTTCTAGTGGATCTGTCAACATTGTTGAAGTTGTTCATATTCTTTTATCTGCGGGTGCAGATCCTAATTCTGTTGATGCTAAGGGTGATCGCCCTGTTGATGTCATTTATGTACATCCCAAGCTGCATAACATGAAGACCAAACTTGAGGAACTATTAAGAAGCAATCATTGTCAACCCGATGTGGTGACCTTACAATTATCCATCAAGACCTCATGTCCTGTGTCATCATCTCTTTCTTCGTCACCAGAAAATGGGTTTTTATCTTCAGAGTTAACATCTCTTGTTGTGAAAAGTGCTGATGAATCTGTTAATTCTACAATGGAAAAGAAAGAATATCCAATTGATCCTTCTCTTCCCGACATTAAAAATAGCATTTATGCAACTGATGAGTTCCGCATGTTCTCTTTTAAGGTGAGGCCTTGCTCGCGAGCATATTCACATGATTGGACTGAATGTCCATTTGTCCATCCTGGGGAAAATGCTCGTAGGAGGGATCCAAGAAAGTTTCATTACAGTTGTGTACCATGTCCAGATTTCCGCAAGGGTGCTTGTAGGCGGGGGGATATGTGTGAATATGCACATGGGGTGTTTGAGTGCTGGCTCCATCCTGCTCAGTATCGAACGCGACTATGCAAGGATGGCACTAGTTGTGATAGGCGGGTTTGTTTTTTTGCTCATGCAACTGAGGAACTCAGGCCCTTGTATGTCTCTACTGGTTCTGCCGTTCCTTCCCCACGATCGTCAACATCAGCACCAAATGTTATGGACATGGCTGCTGCATTAACTCTCTTTCCTGGCTCACCGTCATCAATGTCAGCCATGTCTCCTTCTCCATTCTCTCAGCCCATGTCTTCTTCTCCATTTTCTCAGCCCATGTCTCCAGTCTCAAATGGCTTATTACATTCCGCAGCTTGGGCCCAGCCTAATGTACCCACCCTTCATCTCCCTGGAAGCAGCCTACAATCCAGTCGCCTGAGGACATCTCTTAGTGCTCGGGACATGCCACTGGAGGATTTAAATATGTTGCTGAATTTTGATTCCCAGAAACAGCTTTTGAATGACATGAATTGTTTCTCTCAACTCCGGCCTGGCTCTGTCTGTCATGGTGATTTTGGTCTGTCTAAAACTCTAATTCCTGCCAATCTGGAAGAGATTTTTGCGAGTGAGATATCTTCATCCCCTAGGTTTTCTGATTCTGGAGCAGCTGGTGTTTTTTCTCCGACTCACAAATCTGTTCTGTCGCAATTCCAACAAAAACAGAGTATTCCGTCACCCATTAATACTAGTGTTTGTTCTCCTAAATCTGTTGAGCACCAATTGCTGCATGCCTCTTTGAGAGCCTTGTCTCCTGGAAGGATGTCACCAAGAAATGCTGATATATCCCCTATGGGCACTAGACATCCTCCATTTCCTCATCGCGAGAAACATCAAAATCTTCTCAGCTTGAGCCCTAGGGACCTTGGATCCAACATTTTGGCCTCAAATGGAACACAGGTAAGTTCTTGGTCAAAATGGGGTTCTCCCATTGGAAAAGCGGATTGGTCAGTTCATGGAGATGAACTGGCCCGTTTGAGAGGATCATCTTTAGCTGAGCTTGGGAATGGTATCGAGGAGCCTGACTTGTCATGGGTCCAGACTCTTGTTAAAGAATCTCCACCAGAAGTTATGAGAGACAAGCTGACAGTTCCAGCCACTGGCAGTACAGCGCCATGCCCTGTGAGGCTTTGA 2031 44.26 MSCQTTECESSFYYLLEFASDNDVEGFKRLIDYDASFINKSGLWYVRRNGSKQVVQEDRTPLMVAATYGSVNVLKLLLSYPEIDVNLSSGVDRSTALHCAASSGSVNIVEVVHILLSAGADPNSVDAKGDRPVDVIYVHPKLHNMKTKLEELLRSNHCQPDVVTLQLSIKTSCPVSSSLSSSPENGFLSSELTSLVVKSADESVNSTMEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHATEELRPLYVSTGSAVPSPRSSTSAPNVMDMAAALTLFPGSPSSMSAMSPSPFSQPMSSSPFSQPMSPVSNGLLHSAAWAQPNVPTLHLPGSSLQSSRLRTSLSARDMPLEDLNMLLNFDSQKQLLNDMNCFSQLRPGSVCHGDFGLSKTLIPANLEEIFASEISSSPRFSDSGAAGVFSPTHKSVLSQFQQKQSIPSPINTSVCSPKSVEHQLLHASLRALSPGRMSPRNADISPMGTRHPPFPHREKHQNLLSLSPRDLGSNILASNGTQVSSWSKWGSPIGKADWSVHGDELARLRGSSLAELGNGIEEPDLSWVQTLVKESPPEVMRDKLTVPATGSTAPCPVRL 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 651152 653182 - Bpe003473.1 Bpe11g00093 110238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00093 676 Pfam Ankyrin repeats (3 copies) 24 126 IPR002110 GO:0005515
Bpe11g00093 676 Gene3D - 12 157 IPR036770 -
Bpe11g00093 676 MobiDBLite consensus disorder prediction 373 393 - -
Bpe11g00093 676 ProSiteProfiles Ankyrin repeat region circular profile. 57 79 - -
Bpe11g00093 676 Gene3D - 271 334 - -
Bpe11g00093 676 ProSiteProfiles Ankyrin repeat profile. 57 79 IPR002110 GO:0005515
Bpe11g00093 676 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Bpe11g00093 676 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Bpe11g00093 676 PRINTS Ankyrin repeat signature 111 125 IPR002110 GO:0005515
Bpe11g00093 676 PRINTS Ankyrin repeat signature 93 108 IPR002110 GO:0005515
Bpe11g00093 676 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bpe11g00093 676 SMART ANK_2a 7 40 IPR002110 GO:0005515
Bpe11g00093 676 SMART ANK_2a 57 87 IPR002110 GO:0005515
Bpe11g00093 676 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bpe11g00093 676 PANTHER UNKEMPT FAMILY MEMBER 2 663 IPR045234 -
Bpe11g00093 676 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Bpe11g00093 676 SUPERFAMILY Ankyrin repeat 13 139 IPR036770 -
Bpe11g00093 676 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bpe11g00093 676 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 2 663 - -
Bpe11g00093 676 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe10g00548 Bpe11g00093 CCT
Bpe10g00548 Bpe11g00093 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01472 Bpe-Chr4:21301267 Bpe11g00093 Bpe-Chr11:651152 0 dispersed
Bpe04g01745 Bpe-Chr4:23157803 Bpe11g00093 Bpe-Chr11:651152 5.39E-135 dispersed
Bpe11g00093 Bpe-Chr11:651152 Bpe15g01239 Bpe-Chr15:20940315 5.35E-145 dispersed
Bpe10g00548 Bpe-Chr10:12538611 Bpe11g00093 Bpe-Chr11:651152 0 wgd
Bpe11g00093 Bpe-Chr11:651152 Bpe03g00541 Bpe-Chr3:25640373 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22006 PF12796 Ank_2 2.30E-11 CL0465 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00093 - - csv:101205376 856.67