Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00104 ATGGGTCGAGGAAAGATTGAGATTAAAAAGATTGAGAATGTTAATAGTAGGCAGGTAACTTTTTCAAAGAGGCGGGCTGGGTTGCTGAAGAAGGCTCAAGAACTAGCTATTCTCTGCGATGCGGAGGTTGCTGTGATTATCTTCTCTAATACTGGAAAGCTCTTCGAGTTTTCGAGTTGCAGTATGACACATACCCTTTCTAGATATAGCAACTGTATGGATTCTTCAGAAACCGCAATATTAGAATACAGGGCAGAGGTACCTTTCGAGAGTGACCTGTCTGGCTTAGCCTTGAAAGACTTGCAGAACCTTGAACAACAGTTAAATGAAGGGTTATCTTCAGTGAAGGAGAGAAAGGAGAAATTATTGATGGAGCAACTCGAACAATCAAGGGTACAGGAACAACGAGTTATACTAGAAAACGAAACCTTGAGGAGACAGATCGAAGAGCTTCGTTGTGTTTATCCACCGACGACCTATCCAATTCCGGCATATTTTGAATCATATTATGCAGAAAAGAAGAACTCAGTCGTTGAAAATGGAGCTGCAAGTCCGGATAAGGCCTCGAACTCTGCATTTGATAAAGGAGATTCGGATACTACCTTGCATTTGGGG 615 42.11 MGRGKIEIKKIENVNSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSCSMTHTLSRYSNCMDSSETAILEYRAEVPFESDLSGLALKDLQNLEQQLNEGLSSVKERKEKLLMEQLEQSRVQEQRVILENETLRRQIEELRCVYPPTTYPIPAYFESYYAEKKNSVVENGAASPDKASNSAFDKGDSDTTLHLG 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 712758 715276 - Bpe024733 Bpe11g00104 110249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00104 205 Pfam K-box region 92 148 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe11g00104 205 Gene3D - 14 77 IPR036879 GO:0003677|GO:0046983
Bpe11g00104 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bpe11g00104 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bpe11g00104 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bpe11g00104 205 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL15 1 205 - -
Bpe11g00104 205 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bpe11g00104 205 ProSiteProfiles K-box domain profile. 59 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bpe11g00104 205 PANTHER MADS BOX PROTEIN 1 205 - -
Bpe11g00104 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bpe11g00104 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bpe11g00104 205 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bpe11g00104 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bpe11g00104 205 MobiDBLite consensus disorder prediction 181 205 - -
Bpe11g00104 205 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Bpe11g00104 205 Coils Coil 98 121 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00104 Bpe-Chr11:712758 Bpe02g00148 Bpe-Chr2:1012227 3.79E-41 dispersed
Bpe11g00104 Bpe-Chr11:712758 Bpe03g00524 Bpe-Chr3:25272818 9.51E-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22007 PF01486 K-box 6.80E-14 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00104 - - zju:107417456 284.263