Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00121 ATGAGTTCCGTAGAATTAAGAGCCCTTGGGAAGAGGAATTTAGAATGGGATTTGAATGACTGGAAGTGGGATGGGGATCTTTTCATTGCTAGCTCATTGAATTCAGTGCCATCTGATACCCTGAGGCGGCAAATATTTCCAATTGGAACAATTCCAGAGACTGGAGGCTCATCAAACAGCTCCTCATCATGCTCGGACGATGCTAATATGAGAATCGAGAAAGGGAAGAAAGAAATCGAGAAAAGGAGGAGGATTACTGGGTTGGAAGATAGAGCCTTGCATGACGAAACTGGTGGACTTATTTTAAAGCTCGGTTCTCATGGGTATCCGCTTCCTGAGAGGGAATTAGGGAGTTGGGAGGGATGTAATGGAAAGAAGACGAAATTGGTAGGAGGAAGTTCAAATCGTGCAATTTGCCAGGTGGAGGACTGTGGAGCTGATCTGAGCAAGGCCAAAGATTATCATAGACGACATAAAGTCTGTGAGATGCATTCTAAAGCCAGTAGGGCGCTGGTGGGGAACCTCATGCAGCGTTTCTGTCAACAATGTAGCAGGTTTCATGTTCTTCAAGAGTTTGACGAAGGAAAAAGAAGTTGTCGCAGGCGTTTGGCAGGTCATAACAAGCGAAGAAGAAAAACAAATCCCGAGCCAGCTGCTAATGGAAGCTCCTCAAATGAAGATCAAACCAGTGGCTATCTACTCATTAGCCTGTTGAGAATACTTTCCAACATGCATTCGAATCAATCAGACCAAACCACCGATCAGGATCTGATATCACATCTTTTGAGGAGCATTGCCAGTCAAAGTACTGAGCACAAGGAGAAAGACATATCCGTACATTTGCAGAATCTGCAAAATGGGATATCAGTTTGTAATTCAGAACTAGCCTCTACTTTTCTTTCAAATGGCGCTCAGGATCCTTCAATGCCATCAAAACAGCATGCGACTTTGCCATCGTCTGAGATTCCATCACAAGGGAAAAGCAAGACGAATGACTTTGATTTGAACGACATATACGTTGACTCTGATGATGGAACTGAAGATGTAGAGAGATCTGTACTCCCTGTCCATTTAGGGGCCAGTTCCCTAGAGTCCCCTTGGGCGCAACAAGACTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCAGATTCAGCATCTGCTCAGTCACCTTCTAGCTCTAGTGGAGAAGCTCAGAGCCGGACAGATCGTATTGTTATTAAACTATTTGGAAAAGAGCCCGGTGATTTTCCTCACAATCTACGGGCACAGGTTCTTGATTGGTTGCAACATAGTCCGACTGACATGGAGAGCTACATTAGACCTGGTTGCGTTGTTCTGACAATTTACCTACGTCAGACAGAAGATGCATGGAATGAACTTTGCTATGACCTAAGTTGTGGCTTGAGTAGGCTTCTACAAGGCTCAGATGATGCTTTCTGGAGCACAGGATGGGTTTATGTTAGAATTCAGCATCAATTAGCATTTGTTTTACATGGTCAAGTTGTGGTAGATACGTCCTTAGCCCTTCGAAATAACAATTATTGTAACATTGTCTGCGTAAAACCTATTGCCGTATCTGCATCAGAGAGGGTTCAGTTCTTAGTTAGAGGCTCGAATTTGAAGAGGCCTGGAACGAGGTTACTCTGTGCACTTGAAGGGAAGTATCTGACCGAGAAGGTTGCTCAAGAATCAACTGATTCTGTTGATGCATTAATGGAGCATAATGAGATCCAATGCATTAGCTTTTCTTGCTCTATTCCTATAGTGAATGGAAGGGGCTTCATTGAGGTTGAAGATCATGGATTCAGCAGCAGCTTTTTTCCATTTATAGTCACAGAGGATGATGTATGTTCAGAAATTCGTGTTCTTGAGTCTGAACTGGAGTCGTCGGGAGCTGTAGTAATGGAAACAAGGGTTCAAGCGATGGATTTTATTCATGAAATGGGATGGCTTCTTCATAGAGAACAACTGAAGTCTAAATTGAGCAATTTGAATCCAAATCCAGATCTTTACCCTTTGAATAGGTTTAAGTGGCTCATGGATTTCTCGATAGACCACGATTGGTGTGCTGTTGTGAGGAAATTATTAAACATTCTTCTTGATGGAAATGTGAATGTTGGAGATCACCCATCGGCGAACGCTGCCTTATCTGAGATGGGTATTCTTCACCAGGCTGTAAGGAGAAACAGCAAGTCGCTTGTCGAGCTCCTTTTGAGATATAACCCCAAAAAAGCGAGATGTGAAGAAAATTCAGTGGTTGATGGAGGGGTTGAAGGGTTTTTGTTTAGGCCTGATGTTACTGGACCTGGAGGCTTGACTCCACTTCACATTGCAGCCGGCAAAGACGGGTCTGAGGATGTCCTGGATGCATTAACTGACGATCCCGACATGGTCGGAATGGAAGCGTGGAAGATCATTCGAGACAGTACGGGGTCCACACCTGAAGATTATGCGCGCTTACGTGGCCATTTCTCGTACATCCATCTTGTCCAGAAGAAAATCAATAAGAGGCTTACGCCTGGCCATGTAGTTCTCGACATTCCTACAGGTCTCTCAGAATCTGTGACAAATGTTAAGCAATCGGACAATTTGGGCACTTTCTTTGAGATTGGAACGGCCCAGCCAAGAACCGGTCTTAGGAACTGTAGGTACTGTGATAAGAAACTCACTTGTGGAAAATTGAGCAGGTCTCTGGTTTACAGGCCGGCAATGTTGTCGATGGTGGCCATTGCCGCCGTTTGTGTGTGTGTGGCACTTCTGTTCAAGAGCTCGCCGGAAGTTCTTTATTGTTTCCAGCCGTTCAGATGGGAATTGTTAGATTACGGAACAAGCTGA 2841 44.39 MSSVELRALGKRNLEWDLNDWKWDGDLFIASSLNSVPSDTLRRQIFPIGTIPETGGSSNSSSSCSDDANMRIEKGKKEIEKRRRITGLEDRALHDETGGLILKLGSHGYPLPERELGSWEGCNGKKTKLVGGSSNRAICQVEDCGADLSKAKDYHRRHKVCEMHSKASRALVGNLMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPEPAANGSSSNEDQTSGYLLISLLRILSNMHSNQSDQTTDQDLISHLLRSIASQSTEHKEKDISVHLQNLQNGISVCNSELASTFLSNGAQDPSMPSKQHATLPSSEIPSQGKSKTNDFDLNDIYVDSDDGTEDVERSVLPVHLGASSLESPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVIKLFGKEPGDFPHNLRAQVLDWLQHSPTDMESYIRPGCVVLTIYLRQTEDAWNELCYDLSCGLSRLLQGSDDAFWSTGWVYVRIQHQLAFVLHGQVVVDTSLALRNNNYCNIVCVKPIAVSASERVQFLVRGSNLKRPGTRLLCALEGKYLTEKVAQESTDSVDALMEHNEIQCISFSCSIPIVNGRGFIEVEDHGFSSSFFPFIVTEDDVCSEIRVLESELESSGAVVMETRVQAMDFIHEMGWLLHREQLKSKLSNLNPNPDLYPLNRFKWLMDFSIDHDWCAVVRKLLNILLDGNVNVGDHPSANAALSEMGILHQAVRRNSKSLVELLLRYNPKKARCEENSVVDGGVEGFLFRPDVTGPGGLTPLHIAAGKDGSEDVLDALTDDPDMVGMEAWKIIRDSTGSTPEDYARLRGHFSYIHLVQKKINKRLTPGHVVLDIPTGLSESVTNVKQSDNLGTFFEIGTAQPRTGLRNCRYCDKKLTCGKLSRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYCFQPFRWELLDYGTS 946
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 867113 872374 + Bpe003498.1 Bpe11g00121 110266

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00121 946 SUPERFAMILY Ankyrin repeat 685 831 IPR036770 -
Bpe11g00121 946 Pfam SBP domain 139 212 IPR004333 GO:0003677
Bpe11g00121 946 MobiDBLite consensus disorder prediction 301 332 - -
Bpe11g00121 946 Gene3D - 130 200 IPR036893 GO:0003677|GO:0005634
Bpe11g00121 946 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 318 945 - -
Bpe11g00121 946 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 318 945 IPR044817 GO:0003677
Bpe11g00121 946 Gene3D - 675 838 IPR036770 -
Bpe11g00121 946 MobiDBLite consensus disorder prediction 203 227 - -
Bpe11g00121 946 ProSiteProfiles Zinc finger SBP-type profile. 136 213 IPR004333 GO:0003677
Bpe11g00121 946 SUPERFAMILY SBT domain 137 217 IPR036893 GO:0003677|GO:0005634
Bpe11g00121 946 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 7 306 IPR044817 GO:0003677
Bpe11g00121 946 MobiDBLite consensus disorder prediction 363 401 - -
Bpe11g00121 946 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 1-RELATED 7 306 - -
Bpe11g00121 946 MobiDBLite consensus disorder prediction 301 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00121 - - - pvy:116138190 1275.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe03g00509 Bpe11g00121 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00382 Bpe-Chr8:2336797 Bpe11g00121 Bpe-Chr11:867113 2.20E-32 dispersed
Bpe08g01006 Bpe-Chr8:12391279 Bpe11g00121 Bpe-Chr11:867113 3.52E-33 dispersed
Bpe11g00121 Bpe-Chr11:867113 Bpe13g00713 Bpe-Chr13:13682608 0 dispersed
Bpe14g00644 Bpe-Chr14:5247438 Bpe11g00121 Bpe-Chr11:867113 5.86E-30 dispersed
Bpe11g00121 Bpe-Chr11:867113 Bpe03g00509 Bpe-Chr3:24977584 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g464 . . . . Bpe03g00509 . Bma13g00108 . . . Cma01g00262 Cma14g00958 Car01g00236 Car14g00872 . . Cpe03g00825 . . . . . . . . . . . . . . Cone17ag0385 Cone20ag1033 . Cone11ag0721 . . Chy04g01191 . Blo07g00617 Blo10g00099 Bda05g00421 . . Bpe11g00121 . . . Cmo01g00273 Cmo14g00981 . . . . Cpe02g01546 . . . . . . . . Cla10g01123 Cam10g1498 Cec10g1187 Cco10g1169 Clacu10g1180 Cmu10g1953 Cre10g1335 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00121 CCT 163 946 SBP-box Gene Family AT2G47070 60.4 1.3e-254 875.9
Bpe03g00509 CCT 163 987 SBP-box Gene Family AT2G47070 56.2 1.9e-245 845.5
Bpe11g00121 CCT 3 946 SBP-box Gene Family AT3G60030 56.0 1.5e-281 965.7
Bpe03g00509 CCT 2 987 SBP-box Gene Family AT3G60030 53.1 1.0e-272 936.4
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50570 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50570 63.6 2.1e-37 153.3
Bpe11g00121 CCT 163 946 SBP-box Gene Family AT2G47070 60.4 1.3e-254 875.9
Bpe03g00509 CCT 163 987 SBP-box Gene Family AT2G47070 56.2 1.9e-245 845.5
Bpe11g00121 CCT 3 946 SBP-box Gene Family AT3G60030 56.0 1.5e-281 965.7
Bpe03g00509 CCT 2 987 SBP-box Gene Family AT3G60030 53.1 1.0e-272 936.4
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50570 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50570 63.6 2.1e-37 153.3
Bpe15g00225 . 5 126 SBP-box Gene Family AT5G50670 65.0 1.7e-39 160.2
Bpe09g00547 BCT 93 199 SBP-box Gene Family AT5G50670 63.6 2.1e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22008 PF03110 SBP 2.60E-29 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00121 Bpe_Chr11 FPKM 0.0 0.0 0.0 0.440449 0.720331 0.0 0.0 0.780005 0.689882 0.45461