Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00138 ATGCAGTGTTCCTCTTTCATTTTGTTATCTTTTGTGTTGTTTGTTCAACAATTTAGTTGTTTTACAGCTTTGGATCACAAAGTGAACAATGGCGTTCCAAATGAAGTTGCTTATACTATCCTTGTTGATAAATCCGGGGGAGGAAACTTCACAACAGTCCAAAGTGCCATCGACTCTGTTCCTTCCTCAAATTCTCAATGGATACGAATCCAAATCTCTGCTGGCATATACAGCGAAAAAGTGACAATCCCTGAAGACAAACCGTTCATTTTTCTCCAAGGGGCTGGAAGTATGTACTCATTTATTCAATTTGGCGACCACGCTGCAACAGATAGCAGTTCTACATTCACATCGAGGCCTGATAATATTGTAGCAAGTGGAATCACGTTTAAGGGTGTTCTCTTCATGCAGAATACATACAATGCACCAGTTGATCTCCACGACATGGTTGCTCCTGCTGTGGCTGCTAGAATATTTGGGGATAAGTCTGCCTTTTATCATTGTGCTTTTGTTGGCTTGCAAGATACCTTGTGGGATGCATCCGGGCGACATTATTTTTACAAATGTTACATTCAAGGCGTAATTGACTTCATATTTGGTGCCGGCCAGTCTATCTATGAGAAATGTGTGATCAAAGTGGCAACACATTTTCCTTCGGTCACTTATGGCTATATAACTGCTCAGGCAAGGGATTCAATGAGTGACACAAATGGATTTGTCTTTAAATATTGTGTATTTACTGGAAACATCAAAGCGTACCTTGGGAGGGGCTATGGAGCTTATTCCAGAGTAATAATTTTCAAGTCAGAGGAAGCAGATATAATAATCCCGTTAGGTTGGGATTCTTGGAATTCCAAGATAACGGATATAACATATGCAGAAGTTAATTGCTTTGGAGAAGGGTCAGACACTTCAAAGCGTGTGCCCTGGCTAAAGAAACTAACTGCTGAAGAAGTGGCTGCGTTTGTAGATATGAAGTATATTGATGAAGAAGGGTGGATCCCTCAACTTCCCATCTTCTATGCAAGTTAG 1032 40.7 MQCSSFILLSFVLFVQQFSCFTALDHKVNNGVPNEVAYTILVDKSGGGNFTTVQSAIDSVPSSNSQWIRIQISAGIYSEKVTIPEDKPFIFLQGAGSMYSFIQFGDHAATDSSSTFTSRPDNIVASGITFKGVLFMQNTYNAPVDLHDMVAPAVAARIFGDKSAFYHCAFVGLQDTLWDASGRHYFYKCYIQGVIDFIFGAGQSIYEKCVIKVATHFPSVTYGYITAQARDSMSDTNGFVFKYCVFTGNIKAYLGRGYGAYSRVIIFKSEEADIIIPLGWDSWNSKITDITYAEVNCFGEGSDTSKRVPWLKKLTAEEVAAFVDMKYIDEEGWIPQLPIFYAS 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 988514 989872 + Bpe003515.1 Bpe11g00138 110283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00138 343 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 6 339 - -
Bpe11g00138 343 Pfam Pectinesterase 40 329 IPR000070 GO:0030599|GO:0042545
Bpe11g00138 343 PANTHER PECTINESTERASE 6 339 - -
Bpe11g00138 343 SUPERFAMILY Pectin lyase-like 36 338 IPR011050 -
Bpe11g00138 343 Gene3D - 33 343 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00138 Bpe-Chr11:988514 Bpe13g00699 Bpe-Chr13:13605771 7.09E-70 dispersed
Bpe05g01139 Bpe-Chr5:23677595 Bpe11g00138 Bpe-Chr11:988514 1.89E-84 transposed
Bpe11g01415 Bpe-Chr11:10524694 Bpe11g00138 Bpe-Chr11:988514 1.48E-96 transposed
Bpe11g00138 Bpe-Chr11:988514 Bpe06g00594 Bpe-Chr6:16801593 1.02E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00138 - - tcc:18613720 379.793