Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00186 ATGTCTTCTGTCTTGGTGTTGAATGTAGAATCTATGTGGCATTTGGGGCTGACAAGTAGAGAATCGTATCCTGAGCGTCCTGGTGTGCCTAACTGTGTGTATTATATGCGATCTGGATTCTGTGGATATGGAAGCAGATGCCGTTTCAATCATCATCCTGACCGTGCAGCGGTTGCAGCAGCTGTAAGTGCTTCTGGGGATTACCCAGAACGAATAGGGGAACCTGTATGCCAGTATTACTTAAAAACTGGGACATGTAAATTTGGGGCATCCCGTAAGTCTCACTATCCAAAACATGGTGGTGGATCCCTTAGCCAGGCTCCTCTTAATATCCATGGATACCCGCTTCGACCGAGCGAAAGAGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAATTCGGTCTAACTTGTAAATTCCACCATCCTCAACCAGCTGGCTCATCCACACCAGCTGCTGCACCTCAGTTTTATCCACCAGTGCAGTCTCCTTCAGTCCCTATGCCCGACCAATATGGAGTGGTATCCACTGGCTTGAGAGTAGCCAGACCACCTCTTTTACCTGGTTCTTATGTGCAAGGGACCTATGGTCCTGTTTTGCTTCCCCCAGGAGTCGTTTCAATTCAAGGATGGAGTCCTTATTCGGCACCTGTAAGCCCTGCATTATCTCCTGGAGCTCAACCCACAGTTGGAGCATCTTCTGTTTATGGCGTAGCCCAGCTGTCTCCTACAACACCATCTCTTCCAAGACCATATCCTTCTTTACCTTTGTCGCTTGGTCCTTCCAGCGGTAATCAAAGGGAACAGTTGTTTCCGGAGAGACCTGGTGAACCAGAATGCCAGTATTACATAAGAACTGGTGATTGCAAGTTTGGGGCAGGTTGCCGATATCATCATCCTCACAATCGAATTGTACCAAGGACAAATTGTGTTCTTAGCCCACTTGGCCTTCCCTTGCGACCGCGACAGTTTCTTATTCTTATTTGTAATGCGCAGGGGGTGCAAGCTTGTACATTTTACTTGCAAAATGGGCACTGCAAATTTGGATCAACCTGTAAATTTGATCATCCGATGGGGACAATGAGATACAGTCCGTCAGCCTCGTCTCTCATTGACATGCCTGTTGCTCCTTATCCTGTTGGGTCTCTGCTGGCCACTTTGGCTCCTCCATCCTCTTCTTCAGAGCTTAATCCAGAGCTGATGTCAGGGTCGAGGAAAGAATCATATTCAGCTAGATTGCCTTCTTCTGACAGTACCTCTAGTAGTACAGTTGGTTTAATTTACTCTCAGACTGGACCTGATGTTCAACTTTCTAGCCAAAGTTCTGCTCCTTTGAACAACAGCAGGAATTCTAGGCAAGGTGGGGAGCCGCGACATTCTAGTTAG 1386 47.33 MSSVLVLNVESMWHLGLTSRESYPERPGVPNCVYYMRSGFCGYGSRCRFNHHPDRAAVAAAVSASGDYPERIGEPVCQYYLKTGTCKFGASRKSHYPKHGGGSLSQAPLNIHGYPLRPSERECSYYLKTGQCKFGLTCKFHHPQPAGSSTPAAAPQFYPPVQSPSVPMPDQYGVVSTGLRVARPPLLPGSYVQGTYGPVLLPPGVVSIQGWSPYSAPVSPALSPGAQPTVGASSVYGVAQLSPTTPSLPRPYPSLPLSLGPSSGNQREQLFPERPGEPECQYYIRTGDCKFGAGCRYHHPHNRIVPRTNCVLSPLGLPLRPRQFLILICNAQGVQACTFYLQNGHCKFGSTCKFDHPMGTMRYSPSASSLIDMPVAPYPVGSLLATLAPPSSSSELNPELMSGSRKESYSARLPSSDSTSSSTVGLIYSQTGPDVQLSSQSSAPLNNSRNSRQGGEPRHSS 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1278824 1282310 + Bpe003563.1 Bpe11g00186 110331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00186 461 MobiDBLite consensus disorder prediction 389 461 - -
Bpe11g00186 461 SUPERFAMILY CCCH zinc finger 334 362 IPR036855 GO:0046872
Bpe11g00186 461 MobiDBLite consensus disorder prediction 244 274 - -
Bpe11g00186 461 SMART c3hfinal6 117 144 IPR000571 GO:0046872
Bpe11g00186 461 SMART c3hfinal6 274 301 IPR000571 GO:0046872
Bpe11g00186 461 SMART c3hfinal6 26 53 IPR000571 GO:0046872
Bpe11g00186 461 SMART c3hfinal6 331 358 IPR000571 GO:0046872
Bpe11g00186 461 SMART c3hfinal6 71 97 IPR000571 GO:0046872
Bpe11g00186 461 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 333 358 IPR000571 GO:0046872
Bpe11g00186 461 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 28 53 IPR000571 GO:0046872
Bpe11g00186 461 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 300 IPR000571 GO:0046872
Bpe11g00186 461 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 120 144 IPR000571 GO:0046872
Bpe11g00186 461 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 74 91 IPR000571 GO:0046872
Bpe11g00186 461 SUPERFAMILY CCCH zinc finger 30 54 IPR036855 GO:0046872
Bpe11g00186 461 MobiDBLite consensus disorder prediction 389 455 - -
Bpe11g00186 461 ProSiteProfiles Zinc finger C3H1-type profile. 274 302 IPR000571 GO:0046872
Bpe11g00186 461 ProSiteProfiles Zinc finger C3H1-type profile. 71 98 IPR000571 GO:0046872
Bpe11g00186 461 ProSiteProfiles Zinc finger C3H1-type profile. 26 54 IPR000571 GO:0046872
Bpe11g00186 461 ProSiteProfiles Zinc finger C3H1-type profile. 117 145 IPR000571 GO:0046872
Bpe11g00186 461 ProSiteProfiles Zinc finger C3H1-type profile. 331 359 IPR000571 GO:0046872
Bpe11g00186 461 SUPERFAMILY CCCH zinc finger 119 145 IPR036855 GO:0046872
Bpe11g00186 461 PANTHER PROTEIN PHOSPHATASE RELATED 10 438 - -
Bpe11g00186 461 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 58 10 438 - -
Bpe11g00186 461 Gene3D - 26 99 - -
Bpe11g00186 461 Gene3D - 273 369 - -
Bpe11g00186 461 Gene3D - 100 151 - -
Bpe11g00186 461 SUPERFAMILY CCCH zinc finger 279 303 IPR036855 GO:0046872
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g00449 Bpe11g00186 CCT
Bpe03g00449 Bpe11g00186 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00851 Bpe-Chr5:21716389 Bpe11g00186 Bpe-Chr11:1278824 6.83E-09 dispersed
Bpe09g00685 Bpe-Chr9:15427289 Bpe11g00186 Bpe-Chr11:1278824 1.82E-110 dispersed
Bpe11g00186 Bpe-Chr11:1278824 Bpe13g00654 Bpe-Chr13:13357877 6.75E-121 dispersed
Bpe11g00186 Bpe-Chr11:1278824 Bpe03g00449 Bpe-Chr3:23531545 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22010 PF00642 zf-CCCH 1.50E-08 CL0537 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00186 - - cpap:110821377 705.286