Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00238 ATGGTGAAAAACATAATATCAATGAACAAAACAGACGAAACAGTCGTATGCTATGCACCATCAATGATAACCACAAATGGTATTTGGCAAGGAGACAACCCTTTGGATTATGCCCTTCCCCTCTTTGTTTTGCAGTTGACAATGGTGGTCGTCCTCACTCGCATCCTCGTTTTCCTCCTCAAACCATTCCGGCAACCTCGAGTCGTTTCAGAAATCTTGGGTGGCGTCATTTTGGGTCCTTCAGTTCTTGGGAGGAACGTGAAATTTGCCCAGGCAATATTTCCTCTCAGAAGTGTGATGGTGCTAGAAACAATGGCGAATGTGGGTCTTCTTTATTTTCTTTTCTTAGTGGGAGTGGAGATGGACCTGTCTGTAATACGTAGAACAGGTCGAAAAGCAATGGCCATAGCCATAGGAGGAATGATTCTTCCCTTCTTAATAGGAGCCTGCTTCTCCCTCATCTTTCATAGATCAGATCCCACAATGAGCAAAGGCACTTTCATTCTCTTTCTGGGCGTTGCCCTCTCTGTCACTGCATTTCCTGTTCTTGCAAGAATACTTGCAGAGCTCAAACTCATTAACACTGAGCTTGGAAGGATTGCAATGGCCTCAGCTCTTTTCAATGACATGTGTGCATGGGTACTTCTAGCCATAGCCATCGCTCTTTCAGAAAATCAAAACACTTCTTTTGCTTCACTTTGGGTCATTTTATCAAGTGCAGCCTTCGTTTCCTTCTCCATCTTGGTCATTCGGCCCGCCATTGCCTGGATAATTAGACGGACGCCTGAGGGTGAGCCGTTCAGCGAGTTCCACATCTGTCTAATTCTCACCGGTGTAATGGTCTCGGGGTTTATTACGGACGCGATCGGAACGCATTCGGTTTTTGGTGCGTTTGTGTTTGGTCTGATTATTCCGAACGGACCACTTGGGGTGACGTTGATAGAGAAACTTGAGGATTTTGTTTCAGGGCTTTTACTCCCTCTCTTCTTTGCCATTAGTGGGCTTAAGACAGATGTAACCACCATCAAAGGACCTGGGACTTGGGGAATATTGCTTCTTGTCATCGTTCTTGCTTGTGGGGGTAAAGTTGCAGGCACTCTCTTGGTTTCCCTTTTCTATCAGATGCCTTACAACGAAGGAGTTTCTCTTGGTTTGCTTATGAACACCAAAGGCCTCATCGAGATGATCATCCTTAACGTTGGAAGAGACCACAAGGTGTTAGATGATCAGTCATTTGCGATAATGGTAATAGTGGCAGTGGTAATGACAGGGATAATAACCCCAATCGTGACTGCAATTTACAAGCCAGCGAGAAGGTTCATACCCTACAAAAAGAGGACAATTCAGAGGTCCAAACCGGATTCGGAGCTCAGGATCTTAGTTTGTATTCACACCCCTAGAAATGTACCGACAATCATCAATCTCCTCGAAGCCTCAAATCCAACCAAAAGATCCCCTATTTGCATCTACGTCCTCCACCTGGTCGAGCTCACAGGTCGAGCCTCTGCCATGCTCATCGTCCACAACACCCACAAATCAGGCCGCGCCTCCCACAACCGGACCCAGGCTCAGTCTGACCACATAATCAACGCCTTCGAGAACTACGAGCAGCATGCCAGCTGCGTTTCAGTGCAGCCTCTCACTGCCATTTCTCCCTATTCCACCATGCATGAAGACATATGCAACTTGGCAGAAGATAAGAGAGTGGCATTCATCATCATTCCATTTCATAAGCAGCAGACTGTGGATGGAGGAATGGAAGCGACAAACCCTGCTTTCCGAACTGTGAACCAGAATGTGCTAGCCAATGCACCTTGCTCGGTGGGGATTTTGGTTGATCGAGGCTTGAGTGGCTCGAGTAGGTTGGCTCCTAATCAGGTCTCCCACAATGTTGTGGTTCTCTTCTTTGGTGGTCAAGACGACAGAGAAGCTCTCTCGTACGCATGGCGGATGTCGGAGCATCCAGGAGTTAGCCTAAGTTTGATGCGGTTTGTCGCCGGAAAAGATTCGTCGGAGCCTTCGAGGCATCCCGAAATGAACTCAAATGACCCGAGAGTCCTTACAGTTGCTACAGAGGTGGAAAAAGAAAAGCAACTGGACGAAGAGTTGTTAAGCGAATTCAGGATGAAAACTATAAGCAACGAGTCAATTGTGTATACGGAGAAAGTGGTCAACAATGGGGAAGAAACAGTGGCATCAATACGATCAATGAACAACATTCATGATTTGTTCATAGTCGGGAGAGGGCAAGGGGTGGTGTCGCCTCTCACGGCTGGGCTGACAGACTGGAGCGAGTGTCCGGAGCTGGGCGCCATTGGAGACTTGCTTGCGTCCTCTGATTTTGCAGCCACTGCTTCGGTGTTGGTGGTGCAGCAATACATTGGAGCTGGGCCACATGGTGAAGGAGTAGGGACCCCTGATAGCCCTGTCCACCAAGTTAATGAGCACTTCAACAACTCATGGCAGATGAATTCCAGGCCTCAACCTGTCTTCTCCAAATGA 2502 47.64 MVKNIISMNKTDETVVCYAPSMITTNGIWQGDNPLDYALPLFVLQLTMVVVLTRILVFLLKPFRQPRVVSEILGGVILGPSVLGRNVKFAQAIFPLRSVMVLETMANVGLLYFLFLVGVEMDLSVIRRTGRKAMAIAIGGMILPFLIGACFSLIFHRSDPTMSKGTFILFLGVALSVTAFPVLARILAELKLINTELGRIAMASALFNDMCAWVLLAIAIALSENQNTSFASLWVILSSAAFVSFSILVIRPAIAWIIRRTPEGEPFSEFHICLILTGVMVSGFITDAIGTHSVFGAFVFGLIIPNGPLGVTLIEKLEDFVSGLLLPLFFAISGLKTDVTTIKGPGTWGILLLVIVLACGGKVAGTLLVSLFYQMPYNEGVSLGLLMNTKGLIEMIILNVGRDHKVLDDQSFAIMVIVAVVMTGIITPIVTAIYKPARRFIPYKKRTIQRSKPDSELRILVCIHTPRNVPTIINLLEASNPTKRSPICIYVLHLVELTGRASAMLIVHNTHKSGRASHNRTQAQSDHIINAFENYEQHASCVSVQPLTAISPYSTMHEDICNLAEDKRVAFIIIPFHKQQTVDGGMEATNPAFRTVNQNVLANAPCSVGILVDRGLSGSSRLAPNQVSHNVVVLFFGGQDDREALSYAWRMSEHPGVSLSLMRFVAGKDSSEPSRHPEMNSNDPRVLTVATEVEKEKQLDEELLSEFRMKTISNESIVYTEKVVNNGEETVASIRSMNNIHDLFIVGRGQGVVSPLTAGLTDWSECPELGAIGDLLASSDFAATASVLVVQQYIGAGPHGEGVGTPDSPVHQVNEHFNNSWQMNSRPQPVFSK 833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1630882 1633806 + Bpe003612.1 Bpe11g00238 110383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00238 833 Gene3D - 41 439 IPR038770 -
Bpe11g00238 833 Gene3D - 477 760 - -
Bpe11g00238 833 PANTHER CATION/H+ EXCHANGER 3 11 814 - -
Bpe11g00238 833 PANTHER CATION/H + ANTIPORTER 11 814 - -
Bpe11g00238 833 Pfam Sodium/hydrogen exchanger family 49 431 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00238 - - - pvy:116140351 1317.75
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01948 Bpe-Chr2:21415740 Bpe11g00238 Bpe-Chr11:1630882 0 dispersed
Bpe03g00563 Bpe-Chr3:25906826 Bpe11g00238 Bpe-Chr11:1630882 0 dispersed
Bpe04g01791 Bpe-Chr4:23408435 Bpe11g00238 Bpe-Chr11:1630882 3.86E-178 dispersed
Bpe07g00084 Bpe-Chr7:622519 Bpe11g00238 Bpe-Chr11:1630882 0 dispersed
Bpe08g00865 Bpe-Chr8:11023633 Bpe11g00238 Bpe-Chr11:1630882 9.95E-134 dispersed
Bpe08g01413 Bpe-Chr8:14957618 Bpe11g00238 Bpe-Chr11:1630882 0 dispersed
Bpe10g00541 Bpe-Chr10:12467726 Bpe11g00238 Bpe-Chr11:1630882 4.26E-131 dispersed
Bpe11g00238 Bpe-Chr11:1630882 Bpe15g01187 Bpe-Chr15:20691976 0 dispersed
Bpe13g00937 Bpe-Chr13:15260789 Bpe11g00238 Bpe-Chr11:1630882 1.75E-09 dispersed
Bpe15g01180 Bpe-Chr15:20660136 Bpe11g00238 Bpe-Chr11:1630882 4.71E-160 dispersed
Bpe15g01181 Bpe-Chr15:20663564 Bpe11g00238 Bpe-Chr11:1630882 2.34E-170 dispersed
Bpe15g01395 Bpe-Chr15:21842403 Bpe11g00238 Bpe-Chr11:1630882 4.18E-154 dispersed
Bpe11g00238 Bpe-Chr11:1630882 Bpe04g00795 Bpe-Chr4:5190426 0 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00238 . 11 811 Antiporter Super Family AT2G13620 73.3 0.0e+00 1184.9
Bpe02g01948 . 10 792 Antiporter Super Family AT2G13620 71.7 0.0e+00 1113.2
Bpe05g00671 . 11 139 Antiporter Super Family AT2G13620 56.6 3.2e-36 150.6
Bpe02g00838 . 76 824 Antiporter Super Family AT3G53720 70.1 1.8e-296 1015.0
Bpe04g00795 . 84 765 Antiporter Super Family AT3G53720 50.7 3.3e-189 658.7
Bpe07g00084 . 858 1560 Antiporter Super Family AT3G53720 50.7 1.6e-186 649.8
Bpe07g00084 . 1 778 Antiporter Super Family AT5G41610 69.6 1.5e-301 1031.9
Bpe04g00795 . 7 765 Antiporter Super Family AT5G41610 64.9 3.9e-281 964.1
Bpe11g00238 . 11 797 Antiporter Super Family AT5G41610 50.6 2.2e-215 745.7
Bpe02g00838 . 1 801 Antiporter Super Family AT5G41610 51.7 5.0e-212 734.6
Bpe05g00671 . 1 140 Antiporter Super Family AT5G41610 68.1 5.1e-47 186.4
Bpe07g00084 . 1 803 Antiporter Super Family AT4G23700 66.1 1.3e-295 1012.3
Bpe04g00795 . 7 764 Antiporter Super Family AT4G23700 62.2 1.4e-270 929.1
Bpe05g00671 . 1 140 Antiporter Super Family AT4G23700 73.6 3.5e-51 200.3
Bpe04g00795 . 4 779 Antiporter Super Family AT3G17630 71.8 0.0e+00 1079.7
Bpe07g00084 . 780 1555 Antiporter Super Family AT3G17630 63.4 3.1e-270 927.9
Bpe11g00238 . 8 793 Antiporter Super Family AT3G17630 50.8 2.0e-221 765.8
Bpe02g00838 . 8 803 Antiporter Super Family AT3G17630 51.5 4.4e-208 721.5
Bpe05g00671 . 9 140 Antiporter Super Family AT3G17630 68.9 2.3e-44 177.6
Bpe07g00084 . 776 1556 Antiporter Super Family AT1G64170 55.3 2.7e-229 792.0
Bpe04g00795 . 6 764 Antiporter Super Family AT1G64170 55.5 5.0e-228 787.7
Bpe05g00671 . 12 140 Antiporter Super Family AT1G64170 72.1 1.1e-44 178.7
Bpe11g00238 . 11 811 Antiporter Super Family AT2G13620 73.3 0.0e+00 1184.9
Bpe02g01948 . 10 792 Antiporter Super Family AT2G13620 71.7 0.0e+00 1113.2
Bpe05g00671 . 11 139 Antiporter Super Family AT2G13620 56.6 3.2e-36 150.6
Bpe07g00084 . 776 1556 Antiporter Super Family AT1G64170 55.3 2.7e-229 792.0
Bpe04g00795 . 6 764 Antiporter Super Family AT1G64170 55.5 5.0e-228 787.7
Bpe05g00671 . 12 140 Antiporter Super Family AT1G64170 72.1 1.1e-44 178.7
Bpe07g00084 . 1 803 Antiporter Super Family AT4G23700 66.1 1.3e-295 1012.3
Bpe04g00795 . 7 764 Antiporter Super Family AT4G23700 62.2 1.4e-270 929.1
Bpe05g00671 . 1 140 Antiporter Super Family AT4G23700 73.6 3.5e-51 200.3
Bpe07g00084 . 1 778 Antiporter Super Family AT5G41610 69.6 1.5e-301 1031.9
Bpe04g00795 . 7 765 Antiporter Super Family AT5G41610 64.9 3.9e-281 964.1
Bpe11g00238 . 11 797 Antiporter Super Family AT5G41610 50.6 2.2e-215 745.7
Bpe02g00838 . 1 801 Antiporter Super Family AT5G41610 51.7 5.0e-212 734.6
Bpe05g00671 . 1 140 Antiporter Super Family AT5G41610 68.1 5.1e-47 186.4
Bpe04g00795 . 4 779 Antiporter Super Family AT3G17630 71.8 0.0e+00 1079.7
Bpe07g00084 . 780 1555 Antiporter Super Family AT3G17630 63.4 3.1e-270 927.9
Bpe11g00238 . 8 793 Antiporter Super Family AT3G17630 50.8 2.0e-221 765.8
Bpe02g00838 . 8 803 Antiporter Super Family AT3G17630 51.5 4.4e-208 721.5
Bpe05g00671 . 9 140 Antiporter Super Family AT3G17630 68.9 2.3e-44 177.6
Bpe02g00838 . 76 824 Antiporter Super Family AT3G53720 70.1 1.8e-296 1015.0
Bpe04g00795 . 84 765 Antiporter Super Family AT3G53720 50.7 3.3e-189 658.7
Bpe07g00084 . 858 1560 Antiporter Super Family AT3G53720 50.7 1.6e-186 649.8
Bpe10g00541 . 24 804 Antiporter Super Family AT3G52080 52.9 2.7e-234 808.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005878 2 1 2 1 2 1 2 1 0 1 1 0 2 1 1 2 0 3 2 2 1 1 1 1 1 1 1 2 1 2 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00238 Bpe_Chr11 FPKM 4.134987 5.209067 3.802734 4.658491 5.984099 3.139135 5.133413 3.149053 2.604159 2.979507