Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00268 ATGAGCACGAGGGAACTTCTCGACATTGAGCCTCTGGAGCTCACGTTTCCATTCGAATTAAAGAAGCAGATATCTTGCTCCCTGCAATTGTCAAATAAGACTGATCAGTACGTCGCTTTCAAGGTGAAAACAACGAATCCAAAGAAGTATTGTGTTCGTCCAAATACCGGCATTGTTATGCCCAGGTCTACATGCGATGTGTTAGTGACCATGCAAGCCCAGAAAGAGACCCCTCCTGATATGCAATGCAAGGACAAGTTCCTCCTTCAGAGTGTGAAAACTATTGATGGGGCTACCCCAAAAGATATAAATGCAGAAATGTTCAATAAGGAGGCGGGGCATATTGTCGAGGAATGCAAATTGAGAGTTGTTTATGTTTCTCCCCCTCAACCTCCTTCTCCTGTACGTGAAGGCTCGGAAGAAGGTTCATCACCACGAGGTTCCGTGTCAGAGAATGGAAATTTTAATGGTGTTGAGTTTGATACTGCTTCAAGGGCATCTTTTGAGCAGCTTCTGCCTCAAAAAAACTCCACTGAGGCAAGGGCTCTTATTGCAAAACTCACGGAAGAAAAGAATAATGCAATTCAACAGAACAACAAGCTTCGCCAGGAATTAGAACTCTTGAGGCGTGAAGGCAAGAAAAATGGTGGTGGCGTCTCCTTACTGCTTGTCATCTTCATTGGTATACTCGGAATCATTCTTGGTTACATAAAGAGAAAGGCTTAA 726 43.8 MSTRELLDIEPLELTFPFELKKQISCSLQLSNKTDQYVAFKVKTTNPKKYCVRPNTGIVMPRSTCDVLVTMQAQKETPPDMQCKDKFLLQSVKTIDGATPKDINAEMFNKEAGHIVEECKLRVVYVSPPQPPSPVREGSEEGSSPRGSVSENGNFNGVEFDTASRASFEQLLPQKNSTEARALIAKLTEEKNNAIQQNNKLRQELELLRREGKKNGGGVSLLLVIFIGILGIILGYIKRKA 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1948297 1952690 - Bpe003643.1 Bpe11g00268 110413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00268 241 MobiDBLite consensus disorder prediction 128 155 - -
Bpe11g00268 241 PANTHER VESICLE-ASSOCIATED PROTEIN 1-1-LIKE 1 239 - -
Bpe11g00268 241 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Bpe11g00268 241 SUPERFAMILY PapD-like 2 141 IPR008962 -
Bpe11g00268 241 Gene3D Immunoglobulins 1 130 IPR013783 -
Bpe11g00268 241 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Bpe11g00268 241 Coils Coil 177 211 - -
Bpe11g00268 241 PIRSF VAMP_assoc_prot 1 240 IPR016763 GO:0005789
Bpe11g00268 241 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 239 IPR016763 GO:0005789
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00268 - - - cit:102611975 327.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe05g00582 Bpe11g00268 CCT
Bpe07g00176 Bpe11g00268 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00553 Bpe-Chr5:19671866 Bpe11g00268 Bpe-Chr11:1948297 1.72E-46 dispersed
Bpe05g01081 Bpe-Chr5:23291457 Bpe11g00268 Bpe-Chr11:1948297 4.71E-74 dispersed
Bpe11g00268 Bpe-Chr11:1948297 Bpe11g01354 Bpe-Chr11:10148882 7.35E-48 dispersed
Bpe13g00767 Bpe-Chr13:14165598 Bpe11g00268 Bpe-Chr11:1948297 2.10E-98 transposed
Bpe14g01016 Bpe-Chr14:7559255 Bpe11g00268 Bpe-Chr11:1948297 1.10E-97 transposed
Bpe11g00268 Bpe-Chr11:1948297 Bpe05g00582 Bpe-Chr5:19898900 5.79E-83 wgd
Bpe11g00268 Bpe-Chr11:1948297 Bpe07g00176 Bpe-Chr7:1190771 1.92E-15 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g534 Blo02g01044 Blo03g00161 Bda06g00029 Bda08g00576 Bpe05g00582 Bpe07g00176 . . . Cmo16g01161 . Cma15g01125 . Car15g01030 Sed04g1666 Cpe14g00917 . Bhi11g00073 Tan01g2092 Cmetu06g0529 . . Mch10g1587 . . . . . . . . . . . . . Csa05g00419 Chy09g01090 . Blo03g00417 . Bda07g00001 . . Bpe11g00268 Bma05g00421 Bma12g00643 . . Cmo15g01185 . Cma16g01109 . Car16g01047 . Cpe13g00231 Bhi12g00443 . . Lac11g2281 Hepe06g1669 . Lcy12g0040 Cla01g00395 Cam01g0412 Cec01g0403 Cco01g0424 Clacu01g0413 Cmu01g0394 Cre09g2117 Lsi09g00420 . . Cme09g01619
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00268 Bpe_Chr11 FPKM 182.579742 190.834763 352.760651 346.596893 222.605896 193.701965 235.604736 1012.365906 1058.841309 1039.203125