Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00301 AGCAAAGTGTTGATAGTAGGAGGAACAGGGTATTTAGGAAAGAGGCTGGTGAAAGCGAGTCTAAGATTAGGGCATGAAACGTACGTAGTTCACAGGCCAGAAATAGGAGTGGACATCGAAAAAGTTCAGCGTTTAGTTTCGTTTAAACAGAAGGGAGCTCGTCTTGTTCCAGCCTCTTTTGATGACTTCAATAGCTTGGTTCAAGCTGTAAAACTTGTAGACGTCGTCATTTCCGCCATTTCTGGTGTTCATATTCGCTCCCACCAAATATTACCTCAACTCAAGCTCGTTGACGCCATCAAAGAAGCTGGAAATGTCAAGAGATTCTTACCGTCGGAGTTTGGGACGGATCCGGCGAGAATGGAGAAGGCGATGGAGCCTGGAAGAGTGACTTTCGACGACAAAATGGAGGTCCGAAGAGCCATAGAAAGAGCCGGAATTCCCTTCACTTACGTCTCTGCAAACTGCTTCGCCGCTTACTTTCTCGGCGGTCTCTGTCAACCAGGCAACCTTCTTCCGTCCAGAGAATCTGTCGTCTTGTTCGGAGATGGCAACCAAAAAGCAATTTATGTCGATGAGGACGACATAGCAACGTACACAATAAAAGCCATAGACGACCCAAGAACTTTGAACAAAACAATGTACATCAGGCCTCCGAAGAACATCTTGTCACAAAGAGAAGTTGTCGGGGTGTGGGAGAAGTTGATAGGGAAGGAGCTCGCCAAGTCGTCTCTCTCCGAACGAGATTTCCTTGCTTCCATGAAAGGGGAAGGGTACGCAGAGCAAGTGGGGTTGACACATTACTATCACGTGTGCTACGAGGGGTGCCTCACAAATTTTGAAATAGGCGAAGGAGGAGTGGAAGCTACTGAGCTTTATCCACGCCACAACTACACTACAGTTGAACAATATATGAAACGCTACGTA 927 46.93 SKVLIVGGTGYLGKRLVKASLRLGHETYVVHRPEIGVDIEKVQRLVSFKQKGARLVPASFDDFNSLVQAVKLVDVVISAISGVHIRSHQILPQLKLVDAIKEAGNVKRFLPSEFGTDPARMEKAMEPGRVTFDDKMEVRRAIERAGIPFTYVSANCFAAYFLGGLCQPGNLLPSRESVVLFGDGNQKAIYVDEDDIATYTIKAIDDPRTLNKTMYIRPPKNILSQREVVGVWEKLIGKELAKSSLSERDFLASMKGEGYAEQVGLTHYYHVCYEGCLTNFEIGEGGVEATELYPRHNYTTVEQYMKRYV 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2203922 2205817 - Bpe024749 Bpe11g00301 110446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00301 309 CDD PCBER_SDR_a 2 304 IPR045312 GO:0016491
Bpe11g00301 309 PANTHER PINORESINOL REDUCTASE-RELATED 1 308 - -
Bpe11g00301 309 Gene3D - 155 305 - -
Bpe11g00301 309 Pfam NmrA-like family 3 239 IPR008030 -
Bpe11g00301 309 PANTHER BIFUNCTIONAL PINORESINOL-LARICIRESINOL REDUCTASE-LIKE 1 308 - -
Bpe11g00301 309 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 2 267 IPR036291 -
Bpe11g00301 309 Gene3D - 1 294 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00301 K21568 PLR; pinoresinol/lariciresinol reductase [EC:1.23.1.1 1.23.1.2 1.23.1.3 1.23.1.4] - cit:102608004 513.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe05g00329 Bpe-Chr5:17095917 Bpe11g00301 Bpe-Chr11:2203922 1.06E-67 dispersed
Bpe07g00424 Bpe-Chr7:4746965 Bpe11g00301 Bpe-Chr11:2203922 8.77E-72 dispersed
Bpe11g00301 Bpe-Chr11:2203922 Bpe13g01329 Bpe-Chr13:18483866 3.10E-18 dispersed
Bpe11g00301 Bpe-Chr11:2203922 Bpe11g00302 Bpe-Chr11:2208836 6.92E-155 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g816 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo03g00896 . Bda07g00063 . . Bpe11g00301 . . . . Cmo19g00217 . . . . . Cpe15g00174 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002260 2 2 2 1 2 2 0 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 1 2 0 2 2 3 6 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00301 Bpe_Chr11 FPKM 9.235803 7.749173 10.935021 11.8202 9.370265 12.525804 9.057099 18.660088 18.393412 17.959322