Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00307 ATGGCAGTCTGTGTAGTCCACACTACCCAATCTCTAAACTCGACTAGCTCAATCTACACTCCCTCCAAAACCACTCTCCCATTCCACCAGAAACAAGTGGTTTTCTACAGCCAGAAAAGCAGGAAATCGACTCCCGCCTCCATCTCCGCATCTCCGTTGATTGTAACGTGCTTGGCCGGCGAGGAACAGACGGTGGTAATCGGTCTAGCGGCGGACTCCGGGTGTGGAAAGAGTACTTTCATGAGACGATTAACGAGCGTCTTCGGAGGAACGGCGGAGCCGCCGAGAGGAGGAAATCCAGATTCAAACACGCTTATAAGCGACACGACGACTGTGATTTGCTTGGATGACTATCATTCTCTGGATCGGACGGGAAGGAAGGTGAAGGGCGTGACTGCGTTGGATCCAAGAGCGAATAATTTTGATTTGATGTATGAACAGGTGAAGGCTTTGAAAAGTGGAATTGCTGTGGACAAGCCTATTTATAATCACGTCTCTGGTCTTTTGGATCCTCCAGAGCTTATCAAGCCTCCCAAGATTCTTGTTATCGAAGGTCTTCATCCAATGTATGATTCAAGAGTAAGAGACCTCCTAGACTTCAGCATCTACTTAGACATAAGCAACGAAGTCAAATTTGCATGGAAAATTCAGAGAGACATGGCTGAGAGAGGACACAGTCTGGAGAGCATCAAAGCCAGCATAGAAGCTCGAAAACCCGACTTCGATGCATACATCGATCCACAAAAGCAACATGCAGATGCAGTGATAGAGGTTTTGCCAACCTTACTCATTCCAGATGACAATGAAGGAAAAGTTTTGAGAGTGAAGCTGATAATGAAAGAAGGGGTAGAGTTCTTCAGCCCTGTTTACTTGTTTGATGAAGGCTCCACCATTTCATGGATTCCTTGTGGAAGAAAGCTCACTTGCTCTTACCCGGGTATCAAGTTCGCCTACGGCCCTGACAGTTACTTTTCTAACGAGGTGTCGGTGTTGGAGATGGACGGGCAGTTCGACAGATTAGACGAGCTGATTTACGTGGAAAGCCATTTGAGCAATCTTTCCAGCAAGTTCTACGGCGAAGTAACCCAGCAAATGCTGAAGCATGCGGATTTTCCGGGCAGCAACAACGGGACGGGTTTGTTCCAGACCATCGTCGGATTGAAAATCAGAGACCTCTACGAGCAGATCGTTGCCGGCAAGGCCAAGACCCCAGTTGGGGCTGCAAAGGCCTGA 1233 48.09 MAVCVVHTTQSLNSTSSIYTPSKTTLPFHQKQVVFYSQKSRKSTPASISASPLIVTCLAGEEQTVVIGLAADSGCGKSTFMRRLTSVFGGTAEPPRGGNPDSNTLISDTTTVICLDDYHSLDRTGRKVKGVTALDPRANNFDLMYEQVKALKSGIAVDKPIYNHVSGLLDPPELIKPPKILVIEGLHPMYDSRVRDLLDFSIYLDISNEVKFAWKIQRDMAERGHSLESIKASIEARKPDFDAYIDPQKQHADAVIEVLPTLLIPDDNEGKVLRVKLIMKEGVEFFSPVYLFDEGSTISWIPCGRKLTCSYPGIKFAYGPDSYFSNEVSVLEMDGQFDRLDELIYVESHLSNLSSKFYGEVTQQMLKHADFPGSNNGTGLFQTIVGLKIRDLYEQIVAGKAKTPVGAAKA 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2237773 2240762 - Bpe003681.1 Bpe11g00307 110452

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00307 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 335 IPR027417 -
Bpe11g00307 410 Pfam Phosphoribulokinase / Uridine kinase family 66 264 IPR006083 GO:0005524|GO:0016301
Bpe11g00307 410 Gene3D - 61 293 IPR027417 -
Bpe11g00307 410 PRINTS Phosphoribulokinase family signature 233 256 IPR006082 GO:0005524|GO:0005975|GO:0008974
Bpe11g00307 410 PRINTS Phosphoribulokinase family signature 180 198 IPR006082 GO:0005524|GO:0005975|GO:0008974
Bpe11g00307 410 PRINTS Phosphoribulokinase family signature 215 232 IPR006082 GO:0005524|GO:0005975|GO:0008974
Bpe11g00307 410 PRINTS Phosphoribulokinase family signature 71 88 IPR006082 GO:0005524|GO:0005975|GO:0008974
Bpe11g00307 410 PANTHER URIDINE KINASE 6 410 - -
Bpe11g00307 410 ProSitePatterns Phosphoribulokinase signature. 215 228 IPR006082 GO:0005524|GO:0005975|GO:0008974
Bpe11g00307 410 CDD PRK 66 354 - -
Bpe11g00307 410 PANTHER PHOSPHORIBULOKINASE 6 410 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00307 K00855 PRK, prkB; phosphoribulokinase [EC:2.7.1.19] - jre:109008315 725.317
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00811 Bpe-Chr8:10162113 Bpe11g00307 Bpe-Chr11:2237773 0 dispersed
Bpe11g00307 Bpe-Chr11:2237773 Bpe14g00215 Bpe-Chr14:2387668 6.38E-14 dispersed
Bpe11g00307 Bpe-Chr11:2237773 Bpe08g01082 Bpe-Chr8:12931670 2.44E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g779 . . . . . . Bma07g00905 . . Cmo16g01248 Cma02g01644 . Car02g01402 . . . Cpe05g00149 . . . . . . . . . . . . . . . . . . Lsi07g01150 . . Cme06g02430 Blo03g00891 . Bda07g00068 . . Bpe11g00307 . . Sed01g4150 Cmo02g01690 Cmo19g00223 . Cma16g01201 . Car16g01131 . Cpe15g00181 Bhi05g00425 Tan07g2037 Cmetu06g0105 Lac11g2460 Hepe06g0978 . Lcy12g1984 . . . . . . . . Csa03g00122 Chy06g02183 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002153 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00307 Bpe_Chr11 FPKM 59.695187 60.752132 236.782166 213.263565 71.653267 83.509781 63.009884 113.014915 116.746902 104.650009