Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00322 ATGGAGCTACACGGATTTTCACACTCAATGTGCAGCTTTAGAATTATGATTTATGCGTTTGCATTGGCAGGGATGCAGGCAGAAGTATTTTCTATGCTTAGAGACATTGTTGAGCACTACAAGAAAGCTGAATATGATGCTTTTGAATTGTTCCCAGCATTGTTTGACACCCCTTACCATTTAGGAAGATCTGATTTTGTGATCAACTTGCTAATTAAGGTTTTTGCTAGCAATTCAATGCTTGAAAATGCCGTGGATGTGTATTTGCGGGCTAAGAAAATAGGTTACATGCCACATATTCGCTCGTTAAATTTTTTGCTTAAATGTTTGGTTGAAGAAAACAAGGTACAACTAGTCCAAAGTTTGTTTGAAGACTTAAAGAAATCTGGGCCAAGGCCTAATGTATGTACTTATACTATTATGATACAATTCTACTGCAACGGAGGATATAAAAGGGACGTAAACATTGGACGAGCAACTATGGTTTTGGAAGAGTTAGTGGAGAGCGGAGCGAACCCAACTGTTGTGACATATAGTACATATATTCATGGACTTTGTAAGTTAGGTTATGTGGAGTTTGCTCTGCAATTTATTGATACTTTAAGACATGGAAACCAGCCGCTCAATGCTTATTGTTATAATGCCATTTTGCATGAACTTTGCCAAGGTGGTAAAATGTTCGAAGCTTTAAAGGTATTTGAAGATATGAAGAGATGTGCAATCCAGCCAGATGTTTATAGCTACAGCATTTTGGTTGATGGGTTATGCAAGAAAGGGGAGATTGAGCTAAGTCTGAATTTAATCGAGGAAATGAAACTCTATCAGCTAAAACCATCCCTTGTTTGCTATACCTCATTAATTTACGGCCTTTGTAAGACCGGATTGATGGACACCTCTTTGGATATGTTCAAAAGTCTAAAAGAATGTGGTTATGAACATGATATGATTTCCTACGACATATTGATAAATGGATTTTGTATGCATGGTGACATGGATACTGCTACTAAACTTTTGGAGGAAATGATATGCAACAATTTAATTCCTGGTGTTTCCACCTTTAGCGGTTTGATTTATGGTTTTTGCAAGGTAAGAGATTTTCACAAGGCATCGGAACTGTACAATAGCATGCTCAAGAGTGGTATATTTTCAGATACTATGACTTTCAATGCTATTATTGAGGGTCATTGTAGCGAAGGCAACTTAGCAGATGCTTTGAAACTTATGGATGAAGTGAAAGAATTTGGAATCATGGGTAACTCATATACCTATGCTGCAATTATCAAGAGACTGTGCAAAGAAAAGAAGTCAGACAAAGTTTGGGAAATATTTCCACTGATGCTAAAGAGGAATGTACGTCCAGAGGCCGTTCATTATGGTACCCTTATGGATGGTTATGCAAAAGAGGCAAATGAAAATGCGGCTTTCATGTTGTACACAATAATGGAAAATTTTGGGGTTAAGCCTGATCAAGTTACCTACACAATTCTTATTAATATGTTCTGCCATAGCAGAAAAATGTATGAAGCTGATAGCCTTTTCAAGCAAATGATTGTAAAAGGAGTGGTTCCAGATAAGATCTCATACACGTGTCTGATTGCTGGATTTTGTAGAACTGGGCACGTGAAGAAGGCTTGGAGTTTGTTCAAAGAAATGATTCAGAAAGGTTATTCGCCAAGTGTTGTTACTTACACTTGTCTGATCGATGGGTATTTGAAGTCGGGTCGTGTGGACATTGCTGACTCTTTGTTCGAGGAAATGAAGCGAAATGAAATTGCTCCTGATGTGGTAACTTACACTGCTCTTATTGCTGGTTATCGAAGACTTGGGAAATTCGATAAAGCTGATGAAACTTTTGATGAAATGAAGACAGTTGGTATAATTCCAGATGATGTTACCTGTTTGACGATGGGTGTGACTGCAGATGTTGTTTCAAAAGTCTAG 1941 37.76 MELHGFSHSMCSFRIMIYAFALAGMQAEVFSMLRDIVEHYKKAEYDAFELFPALFDTPYHLGRSDFVINLLIKVFASNSMLENAVDVYLRAKKIGYMPHIRSLNFLLKCLVEENKVQLVQSLFEDLKKSGPRPNVCTYTIMIQFYCNGGYKRDVNIGRATMVLEELVESGANPTVVTYSTYIHGLCKLGYVEFALQFIDTLRHGNQPLNAYCYNAILHELCQGGKMFEALKVFEDMKRCAIQPDVYSYSILVDGLCKKGEIELSLNLIEEMKLYQLKPSLVCYTSLIYGLCKTGLMDTSLDMFKSLKECGYEHDMISYDILINGFCMHGDMDTATKLLEEMICNNLIPGVSTFSGLIYGFCKVRDFHKASELYNSMLKSGIFSDTMTFNAIIEGHCSEGNLADALKLMDEVKEFGIMGNSYTYAAIIKRLCKEKKSDKVWEIFPLMLKRNVRPEAVHYGTLMDGYAKEANENAAFMLYTIMENFGVKPDQVTYTILINMFCHSRKMYEADSLFKQMIVKGVVPDKISYTCLIAGFCRTGHVKKAWSLFKEMIQKGYSPSVVTYTCLIDGYLKSGRVDIADSLFEEMKRNEIAPDVVTYTALIAGYRRLGKFDKADETFDEMKTVGIIPDDVTCLTMGVTADVVSKV 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2367523 2369463 - Bpe003696.1 Bpe11g00322 110467

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00322 646 Gene3D Tetratricopeptide repeat domain 126 272 IPR011990 GO:0005515
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 559 593 IPR002885 -
Bpe11g00322 646 Pfam PPR repeat family 314 362 IPR002885 -
Bpe11g00322 646 Pfam PPR repeat family 384 432 IPR002885 -
Bpe11g00322 646 Pfam PPR repeat family 491 537 IPR002885 -
Bpe11g00322 646 Pfam PPR repeat family 558 605 IPR002885 -
Bpe11g00322 646 Pfam PPR repeat family 101 147 IPR002885 -
Bpe11g00322 646 Pfam PPR repeat family 209 257 IPR002885 -
Bpe11g00322 646 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 25 634 - -
Bpe11g00322 646 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 634 - -
Bpe11g00322 646 Pfam PPR repeat 456 486 IPR002885 -
Bpe11g00322 646 Pfam PPR repeat 281 310 IPR002885 -
Bpe11g00322 646 Pfam PPR repeat 69 95 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 279 313 IPR002885 -
Bpe11g00322 646 SUPERFAMILY HCP-like 355 561 - -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 419 453 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 457 489 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 561 595 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 421 453 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 246 279 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 526 560 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 596 629 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 387 416 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 316 348 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 491 524 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 211 245 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 352 384 IPR002885 -
Bpe11g00322 646 TIGRFAM PPR: pentatricopeptide repeat domain 281 314 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 594 628 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 454 488 IPR002885 -
Bpe11g00322 646 Gene3D Tetratricopeptide repeat domain 273 343 IPR011990 GO:0005515
Bpe11g00322 646 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Bpe11g00322 646 Gene3D Tetratricopeptide repeat domain 419 517 IPR011990 GO:0005515
Bpe11g00322 646 Gene3D Tetratricopeptide repeat domain 344 417 IPR011990 GO:0005515
Bpe11g00322 646 Gene3D Tetratricopeptide repeat domain 518 588 IPR011990 GO:0005515
Bpe11g00322 646 Gene3D Tetratricopeptide repeat domain 589 636 IPR011990 GO:0005515
Bpe11g00322 646 Pfam PPR repeat 170 199 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 244 278 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 489 523 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 209 243 IPR002885 -
Bpe11g00322 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00322 - - - jre:108984135 777.319
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01194 Bpe-Chr4:14474902 Bpe11g00322 Bpe-Chr11:2367523 4.67E-20 dispersed
Bpe11g00322 Bpe-Chr11:2367523 Bpe11g00938 Bpe-Chr11:6934351 2.98E-61 dispersed
Bpe11g00322 Bpe-Chr11:2367523 Bpe10g00851 Bpe-Chr10:14407885 1.85E-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g700 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g00085 . . Bpe11g00322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003935 0 8 0 0 1 1 1 1 1 0 1 1 1 0 0 1 1 0 1 1 0 0 1 1 0 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00322 Bpe_Chr11 FPKM 6.392283 7.520061 0.460517 0.342809 20.329086 21.199173 22.035311 0.183962 0.128466 0.180919