Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00323 ATGTCCGAGTCGCAACGTAAGGGGTCAGAAAATCCCAAAACTAAAAGACATCGGAAGAAGGAATCAAGGAATCCGCGCGCTCAGGTGGCCAAAACTCGATACGTCAAGAAATTGGATTTGTGTTCGTTGCCCGCTGAAGTTGTTTCCTTGAGTAATAAAGTAGAGTCCATCACTTTTGGTGAAGAGGTTAAAGAGCTGGGGGCAAAGGAAGTGGAAGAGAAAATTGAAGTTCCTGAGTCCAGCGGAGCTGGGGACGATGTTTTTAGTCGCTTGGAGAATTTGTGGCAGCGCGTTGTTGAGCCGGACTTGTCCGAGGAGCAGCTTAGAATCAATGATCAGTTACAGGAAGACGAGTTGCTTGCTACAGAGTCCATATACGGAAACAATGTGTACATGCTTGATCGACAGAGAGGCCTACGTTCTTTCCAGATTTATATTAATGTTGAGCCCCCAGGAGAAATTGCTGTTACTGCAATTTTAAACTCACAAAATAATCTAGAGGTTGAATGGAATAGCTCCAATGATTTCTCTTATTCTTTTAACGTTAAGTACCTTCCCCCTATTGTTCTGACATGTTTATTACCTAAATCATATCCTAGTCACCTTCCACCATTATTTACAATATCTGCTCTGTGGTTGAAACCTCATAGGATTTCTGATCTTTGCTCCAAATTAGATTCAATTTCAGTGGAAAATTTAGGGCAAGAAGTCATATACCATTGGGTGGACTGGCTACACAGTTCGTCTCTTCCTTTTCTTGACTTCGATAGAGAAATAAAACTTGGTCCTTATGGGTTGAGCCATAGCGGAGACTTACGTGTGATATCAGGGAGCATTTCTCCAGATATTGATGTTCCTGCTTTGAGGAGCTACAATAATGAGAGACTCCTTCAGAAATTTTGGGACGAGCAGCATGAATGTAGTATCTGTTTTAGTGAATATGCAGGTACTGAATTTTTGAGACTGCCATGCCAGCATTTCTTTTGTTCACAATGCCTGCAAACTTATTCTAAAATGCATGTCAGGGAAGGGACTGTATTCAAACTTCAATGTCCTGAGCCTAAGTGTTTTGGTGGAATTCCACCTGGTTTGTTGAAGAGGTTTCTTGGTGACCAAGAGTTTGAGCTATGGGAGTCTATAATGTTGACCAAGACACTTGAGTCTATGTCTGACATTGTTTACTGCCCAAGATGTGAAACCCCTTGCATAGAGGATGGTGGCCAGCATGCTCTATGCTCAAAATGCTTTTTCAGTTTTTGTACACTCTGTAGGGAGCGACGCCACGTTGGAATAGAATGCATGACTCCAGAAATGAAGCTTCTACTTCTGGAGAAACGCCAGAATTCAACTCAACTTAATGCTGATCAGAGACGTAAAGAACTTGACATGATCAATGAAATTCTTAGTGTCAAGGAAATATTTCGCAATGCAAAACAGTGTCCATTTTGTAAAATGGCAATATCTCGAACTGAAGGGTGCAACAAGATGGTGTGCGGTAATTGTGGTCATTACTTTTGCTACCGCTGTAACAAGGAAGTTGACGGATACGATCATTTCAGGGATGGTTCCTGTGAGTTGTTCCCACGAGAAATGATTGAGGCTTGGGAAGAGCGAATAAACCAACGACAAGTGATTGGTCAAATTCAAGCACAGCTGTTTGCTGATCATCGTCATCTCTGCCCTAATTGCGGTCAACCCAATGCTAAGGTTGGTAATAATAATCATATATTTTGCTGGGCTTGCCAAAACCACCACTGCTTTTTATGCAAAAAGATCGTCAGGCGTGGTTCTCATCATTATGGACCAAAGGGCTGCAAACAACACACAGAGGGCTAG 1836 42.21 MSESQRKGSENPKTKRHRKKESRNPRAQVAKTRYVKKLDLCSLPAEVVSLSNKVESITFGEEVKELGAKEVEEKIEVPESSGAGDDVFSRLENLWQRVVEPDLSEEQLRINDQLQEDELLATESIYGNNVYMLDRQRGLRSFQIYINVEPPGEIAVTAILNSQNNLEVEWNSSNDFSYSFNVKYLPPIVLTCLLPKSYPSHLPPLFTISALWLKPHRISDLCSKLDSISVENLGQEVIYHWVDWLHSSSLPFLDFDREIKLGPYGLSHSGDLRVISGSISPDIDVPALRSYNNERLLQKFWDEQHECSICFSEYAGTEFLRLPCQHFFCSQCLQTYSKMHVREGTVFKLQCPEPKCFGGIPPGLLKRFLGDQEFELWESIMLTKTLESMSDIVYCPRCETPCIEDGGQHALCSKCFFSFCTLCRERRHVGIECMTPEMKLLLLEKRQNSTQLNADQRRKELDMINEILSVKEIFRNAKQCPFCKMAISRTEGCNKMVCGNCGHYFCYRCNKEVDGYDHFRDGSCELFPREMIEAWEERINQRQVIGQIQAQLFADHRHLCPNCGQPNAKVGNNNHIFCWACQNHHCFLCKKIVRRGSHHYGPKGCKQHTEG 611
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2372097 2376184 - Bpe003697.1 Bpe11g00323 110468

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00323 611 SMART ring_2 480 527 IPR001841 -
Bpe11g00323 611 SMART ring_2 395 423 IPR001841 -
Bpe11g00323 611 SMART ring_2 307 356 IPR001841 -
Bpe11g00323 611 SMART ring_2 560 589 IPR001841 -
Bpe11g00323 611 SMART RWD2001b 117 252 IPR006575 GO:0005515
Bpe11g00323 611 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 96 551 - -
Bpe11g00323 611 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 96 551 IPR031127 GO:0004842|GO:0016567
Bpe11g00323 611 SUPERFAMILY RING/U-box 303 388 - -
Bpe11g00323 611 ProSiteProfiles Zinc finger RING-type profile. 307 355 IPR001841 -
Bpe11g00323 611 Gene3D Ubiquitin Conjugating Enzyme 104 253 IPR016135 -
Bpe11g00323 611 Pfam IBR domain, a half RING-finger domain 377 433 IPR002867 -
Bpe11g00323 611 Pfam IBR domain, a half RING-finger domain 474 513 IPR002867 -
Bpe11g00323 611 SUPERFAMILY UBC-like 111 246 IPR016135 -
Bpe11g00323 611 SMART ibrneu5 462 524 IPR002867 -
Bpe11g00323 611 SMART ibrneu5 375 433 IPR002867 -
Bpe11g00323 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 390 IPR013083 -
Bpe11g00323 611 ProSiteProfiles TRIAD supradomain profile. 303 530 IPR044066 -
Bpe11g00323 611 SUPERFAMILY RING/U-box 376 437 - -
Bpe11g00323 611 Pfam RWD domain 113 247 IPR006575 GO:0005515
Bpe11g00323 611 SUPERFAMILY RING/U-box 468 520 - -
Bpe11g00323 611 ProSiteProfiles RWD domain profile. 117 252 IPR006575 GO:0005515
Bpe11g00323 611 MobiDBLite consensus disorder prediction 1 29 - -
Bpe11g00323 611 ProSitePatterns Zinc finger RING-type signature. 324 333 IPR017907 -
Bpe11g00323 611 Gene3D - 449 556 - -
Bpe11g00323 611 SUPERFAMILY RING/U-box 552 608 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00323 K11971 RNF14, ARA54; E3 ubiquitin-protein ligase RNF14 [EC:2.3.2.31] - jre:109019042 836.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00323 Bpe-Chr11:2372097 Bpe11g01053 Bpe-Chr11:7898427 1.76E-14 dispersed
Bpe11g00323 Bpe-Chr11:2372097 Bpe08g00141 Bpe-Chr8:757273 3.37E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00114 . Blo03g00874 . Bda07g00086 . . Bpe11g00323 . . Sed01g4129 . Cmo19g00236 . . . . . Cpe15g00198 Bhi05g00464 Tan07g2001 Cmetu04g1279 Lac11g2439 Hepe06g1792 . Lcy12g1964 Cla09g01103 Cam09g1156 Cec09g1165 Cco09g1180 . . Cre09g1118 . Csa03g04588 . Cme04g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011677 1 1 1 0 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 0 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00323 Bpe_Chr11 FPKM 0.576546 0.55112 3.619167 4.055029 9.78281 10.218966 8.20094 3.387092 3.347638 3.593239