Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00328 ATGGATTTCGGTGGAAATGTGGTTCACGTCTTCACGTCGAACGAGGTTTGGGCGACGGAAGACGAATACCGAGCTTGGAACAACGGCGGTGAAAATTCTGCAGACAATAACACAAACTGGAGTTGCGATCAGAGACAGTCTCAATCTCAATCGGGAAACGAACCTCCGAGCAAAAAATCAAGAAATTCTCAAGACGCGACTTCCTCCAACCGATCAAAAGCCATCGGAAAAATGTTCTTTAAGACCAAGCTCTGCTGTAAATTCCGAGCTGGGACTTGTCCATATATCACGAACTGTAATTTTGCTCACAGTATGGAAGAGCTGAGACGACCCCCTCCAAATTGGCAAGAAATCGTGGCTGCCCACGAAGAAGAAAGGGGAGTAGTAACGGCGGAGTCAAGAGAAGAATTTCAGATTCCTTCAGTTGGATCTTCTGGATTTAGCTCCGAAACTCTGAGGTCTTATAAGGGAAGACATTGTAAGAAGTTCTACACAGAGGAAGGGTGTCCTTATGGAGATAACTGTACATTTCTTCACGATGAGCAGTCGAAGAATCGAGAGAGTGTAGCTATTAGTCTCGGTCCTGGCGGCTATAATGGTGCTCTCACTGCAGGAGCAAATACCAAGCCTTCAAATTGGAAAACAAGGATCTGCAATAAATGGGAGTTAACTGGCTATTGCCCTTTTGGAAGCAAATGTCATTTTGCCCATGGAGCTGCTGAGTTACACCAATATGGTGGAGGGCTAATGGAAACTGAAGCTAGAGATTCATCTACGCACCCGTCCGAGTTAAAGCAAGGAGGAGGGCTTAAACCTCCGGGAGATACCGGGGCTTCTTTGATCCCTTCGGTTCCTCATTCCGAATCGTATCAAAGATCGACAGTTGTGATTCAAAGGTTAGCTCAGAGACCTCATCAGAAGTGGAAGGGCCCTGACAAAATCAGCCGGATATACGGTGACTGGATTGACGAAATCGAATAG 981 46.28 MDFGGNVVHVFTSNEVWATEDEYRAWNNGGENSADNNTNWSCDQRQSQSQSGNEPPSKKSRNSQDATSSNRSKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHSMEELRRPPPNWQEIVAAHEEERGVVTAESREEFQIPSVGSSGFSSETLRSYKGRHCKKFYTEEGCPYGDNCTFLHDEQSKNRESVAISLGPGGYNGALTAGANTKPSNWKTRICNKWELTGYCPFGSKCHFAHGAAELHQYGGGLMETEARDSSTHPSELKQGGGLKPPGDTGASLIPSVPHSESYQRSTVVIQRLAQRPHQKWKGPDKISRIYGDWIDEIE 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2403220 2405378 + Bpe003702.1 Bpe11g00328 110473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00328 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 80 105 IPR000571 GO:0046872
Bpe11g00328 326 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 213 238 IPR000571 GO:0046872
Bpe11g00328 326 SUPERFAMILY CCCH zinc finger 209 243 IPR036855 GO:0046872
Bpe11g00328 326 MobiDBLite consensus disorder prediction 29 71 - -
Bpe11g00328 326 MobiDBLite consensus disorder prediction 252 289 - -
Bpe11g00328 326 Gene3D - 206 244 - -
Bpe11g00328 326 Gene3D - 74 110 - -
Bpe11g00328 326 Pfam CCCH-type zinc finger 158 180 IPR041367 -
Bpe11g00328 326 SUPERFAMILY CCCH zinc finger 153 182 IPR036855 GO:0046872
Bpe11g00328 326 ProSiteProfiles Zinc finger C3H1-type profile. 212 240 IPR000571 GO:0046872
Bpe11g00328 326 SMART c3hfinal6 154 181 IPR000571 GO:0046872
Bpe11g00328 326 SMART c3hfinal6 212 239 IPR000571 GO:0046872
Bpe11g00328 326 SMART c3hfinal6 79 105 IPR000571 GO:0046872
Bpe11g00328 326 ProSiteProfiles Zinc finger C3H1-type profile. 154 182 IPR000571 GO:0046872
Bpe11g00328 326 SUPERFAMILY CCCH zinc finger 77 110 IPR036855 GO:0046872
Bpe11g00328 326 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 12-LIKE 6 323 - -
Bpe11g00328 326 PANTHER CCCH ZINC FINGER/TIS11-RELATED 6 323 IPR045877 GO:0003729
Bpe11g00328 326 Gene3D - 147 196 - -
Bpe11g00328 326 ProSiteProfiles Zinc finger C3H1-type profile. 79 106 IPR000571 GO:0046872
Bpe11g00328 326 MobiDBLite consensus disorder prediction 27 71 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00328 - - - csv:101210161 539.65
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g00827 Bpe11g00328 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02037 Bpe-Chr2:21966223 Bpe11g00328 Bpe-Chr11:2403220 5.04E-55 dispersed
Bpe11g00015 Bpe-Chr11:105212 Bpe11g00328 Bpe-Chr11:2403220 2.73E-06 dispersed
Bpe11g00328 Bpe-Chr11:2403220 Bpe08g00827 Bpe-Chr8:10378936 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g684 . . . . . . Bma07g00926 Bma14g00159 . . Cma02g01621 . Car02g01380 . . . Cpe05g00170 . . . . . . . . . . . . . . . . . . . . Chy04g00106 . Blo03g00868 Blo19g00195 . Bda09g00731 Bpe08g00827 Bpe11g00328 . . . Cmo02g01666 Cmo19g00243 . . . . . Cpe15g00204 Bhi05g00481 . . . . . . . . . . . . . . Csa03g04597 . Cme04g00130
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004224 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 4 2 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22025 PF00642 zf-CCCH 6.50E-11 CL0537 Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00328 Bpe_Chr11 FPKM 1.426267 0.0 3.020271 4.483713 1.33826 1.550444 0.0 5.239294 4.542102 4.319595