Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00330 ATGGGGTCGCTGGGCAGTCCTAAAACTTGGATTCCTTATATGAACACTGAGGATTGTTTGCAAGGATTTTGTAGCATTTACTGTCCGCAGCGTTGTTACATCATCTCCTCTCCTCCACCGCCGGTGGAATTTTCCGACGAAAATCCTGGCCCTAATTTCTCTCCCCTTGTCGTTGCGATTATAGGAATTTTAGCCAGTGCTTTTCTACTGGTAAGCTATTATACCATAATCTCCAAGTACTGCGGGGAATCGAATCGATCGGGGCGAAGAGAAAATCGTAATGTTAATGGAGAATTAGATGATAATTTGAATCTGAATTTACATGAACCTTGGCAAGCTTCCTCCAATGGCGTAGAAGAGGCTCTTATAAACTCCATTGCTGTCTGTAAGTACAAAAGAGGAGATGGATTGGTACAAATTACAGAGTGTTCTGTTTGCTTAAGTGAGTTTGAAGAAGATGAAGAGATCAGGCTTTTGCCCAAGTGTAGCCATGCATTTCATCTTCCTTGTATTGATAAATGGCTCAAAGCTCACTCCAACTGCCCTCTGTGCAGAGCTAACATTTTCTCTCTCTACAGTTCTTCGCCGCTTCATTCTATCGCATCCATTGAAAACCCACCTTCCGATGAACCAAATGCAGAAACCCACCTGGGAGATGAGAGAGAATCTATTGAAAATAGCTCAGAAACACAAGATTCAGGGGGTGAAATCAGGCAGAGGGACGGAGTAGGTGAGCTGGGAAATCCAAAAGAAGGAGATGTTATAATTGAAATCTCAGATAAAGGATTCAAACCCATTAGAAGGTCCGTTTCGCTGGATCATTCGAGCCGAAATCGCGACTGGGTCGCTCGGGTTTTGAACTCGGATAGAAAAGATTTAGAAGAGATTGGACCGTCGAAACAGTCGTCGGAGGGTGGTGGAGAGTTCAAGTTCAGTCACAAGAAATGGATATTGGATTGTGTAGTTTCGCCGGTTCCGATGAAGAGATCGTTTTCCAGTGAAAGATTCCTTCTCACTAGACATGGAAGAGGAAGTAGTGTTCTTCCCGTCTGA 1053 43.87 MGSLGSPKTWIPYMNTEDCLQGFCSIYCPQRCYIISSPPPPVEFSDENPGPNFSPLVVAIIGILASAFLLVSYYTIISKYCGESNRSGRRENRNVNGELDDNLNLNLHEPWQASSNGVEEALINSIAVCKYKRGDGLVQITECSVCLSEFEEDEEIRLLPKCSHAFHLPCIDKWLKAHSNCPLCRANIFSLYSSSPLHSIASIENPPSDEPNAETHLGDERESIENSSETQDSGGEIRQRDGVGELGNPKEGDVIIEISDKGFKPIRRSVSLDHSSRNRDWVARVLNSDRKDLEEIGPSKQSSEGGGEFKFSHKKWILDCVVSPVPMKRSFSSERFLLTRHGRGSSVLPV 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2408078 2409130 - Bpe003704.1 Bpe11g00330 110475

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00330 350 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Bpe11g00330 350 CDD RING-H2_PA-TM-RING 142 185 - -
Bpe11g00330 350 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 4 342 IPR044675 -
Bpe11g00330 350 MobiDBLite consensus disorder prediction 213 227 - -
Bpe11g00330 350 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 4 342 - -
Bpe11g00330 350 SMART ring_2 143 184 IPR001841 -
Bpe11g00330 350 MobiDBLite consensus disorder prediction 202 251 - -
Bpe11g00330 350 Pfam Ring finger domain 142 185 IPR001841 -
Bpe11g00330 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 191 IPR013083 -
Bpe11g00330 350 SUPERFAMILY RING/U-box 142 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00330 - - - mcha:111026146 374.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00607 Bpe-Chr1:4009435 Bpe11g00330 Bpe-Chr11:2408078 3.75E-22 dispersed
Bpe02g00128 Bpe-Chr2:874284 Bpe11g00330 Bpe-Chr11:2408078 3.24E-42 dispersed
Bpe04g01332 Bpe-Chr4:19927963 Bpe11g00330 Bpe-Chr11:2408078 3.03E-20 dispersed
Bpe05g00861 Bpe-Chr5:21821185 Bpe11g00330 Bpe-Chr11:2408078 5.24E-34 dispersed
Bpe07g00409 Bpe-Chr7:4089082 Bpe11g00330 Bpe-Chr11:2408078 1.55E-25 dispersed
Bpe08g00491 Bpe-Chr8:3209891 Bpe11g00330 Bpe-Chr11:2408078 8.66E-28 dispersed
Bpe10g00830 Bpe-Chr10:14305486 Bpe11g00330 Bpe-Chr11:2408078 6.60E-29 dispersed
Bpe11g00330 Bpe-Chr11:2408078 Bpe14g00858 Bpe-Chr14:6406828 4.85E-61 dispersed
Bpe11g01761 Bpe-Chr11:13993075 Bpe11g00330 Bpe-Chr11:2408078 9.10E-25 dispersed
Bpe11g00330 Bpe-Chr11:2408078 Bpe04g00798 Bpe-Chr4:5240047 1.66E-35 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g679 . . . . . . . Bma14g00158 . . Cma02g01617 . Car02g01377 . . . Cpe05g00173 . . . . . . . . . . . . . . . . . . . . Chy04g00102 . . . Bda07g00092 . . Bpe11g00330 . . Sed02g1537 Cmo02g01662 Cmo19g00246 . . . . . Cpe15g00207 Bhi05g00484 Tan07g1986 Cmetu04g2051 Lac11g2423 Hepe06g1781 . Lcy12g1954 . . . . . . . . Csa03g04600 . Cme04g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001850 2 2 1 2 2 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 1 2 4 2 2 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00330 Bpe_Chr11 FPKM 60.45496 57.247597 99.817574 104.79612 60.854027 80.93441 60.671879 120.906242 139.414215 128.983994