Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00335 ATGAATTCAATTCTGCAGTGCATGACACATACCACATTGCTCGTGCAAGGTCTCCGGACTGCAGATCATTTGCAGATCTGTCAATGTGGGAATAAATATTTCTGCCTTTTCTGTGCTCTCCACGACCACATTGAACTTTCACTTTCTTCATCAGGTGGGGTCGTTTTGCCCCATAAACTCGTCGACAACTTGAACTATATTTCATCTTATTTCGAGAAATTACAGCAGGAAGATGCCCATGAATTCCTGCAATGTTTGTTAGATAAACTCGGAGGACCTTGCTTGTTTTTAATGGAAAACAATAGGTTGGCTTGTGAGAGTGATAACTTAGTGAAAAGGATCTTTGGTGGTCGTCTTATAAGCAAACTTCGCTGTTGCAATTGCGGACATTTATCTGACAAGATTGAGCCTCTACTGGACCTGAGTCTGGAGATTGAAAATGTTGATTCTCTTTCGGGTGCTTTGGAATCTTTCACCAAAGTCGAAAAAATTGATGATCCAGAGATGATATTTACATGTGAGAACTGCAGAGAAGTTGTGTCAATTGAGAAGCAGTTTATGTTCGACGAAGTTCCTTCAGTTGCTACCTTTCATTTGAAAAGATTCAAGAGTGATGGGATTGCTGTGGAGAAAATAAAAAAGCCTGTGAAATTTCCATTAGAGCTGGACTTGAAGCCATACACTTGGTCAGCACGCGATACAGATGTTGAGCTCCGTTACGAACTATATGCTATCGTTGAGCATGTGGGCGAGGCATCCACTTCTGGACACTACATCAGCTTTGTTCGTCCTTCTCCGAATTCATGGTTTAGACTTGATGACTCCAAGGTTACTTTGGTCCCAGAAAACTATGTGTTGTCCCAGGAGGCATACATTCTCTTTTACGCAAAGAAGGGAACACCATGGGCGTATACTTTAATGGAAGGACAGAAGCCGAGGTTTGCTTTGATTGCATTACCCATGTCTGTGCCAGATGACTCAGGTCATCGAGAGCCACTGATTGATAATCGCAGTGTCGATGAATCCACAGAATTTGGATGTGTTGTTTTTTCTCAGAGCTCGAGTCATCTTCTCTCGACCCAACCCTCTGGGGCAGTCGAAGAATTCGACAATAACTCGGGGCAAGATGCTTTGAAATCGGGTAATGAAGAAAACGAAGAGCATGGAAAGTTGGATGATAGTAGAGATACGGATTGTTTTCATACCCTTACGCCGGCTGGATCTCCCGAACCAGACACAGCAATTTTGGAGCCTCAGAGTCATTGCATCCGTCGAGCACGTCCAAAGCCTGGAAAACATGCGAATGCTGAGAGGCCAAGGAAGAAGGTGATGGACAATAGTGAGAAGAGAGAAGCCTTGAGATATGTTCAGAGGAGCATGCCTAGTGCAAGGGGAATGAAGTTCGTCGCTGCCATGCTTGAATGCGGCGGCGAAGGTTCAAGTGGTAAGGCAAGGAAGAGGACAAGAACATCTCCTTGTAACAAGTCTGGCTCCCCTAATACTCGCCGGAAGCACCCCCATAATTCAGTTGCTCGGTTTGTGGCGGCTGGAAATTGA 1557 44.64 MNSILQCMTHTTLLVQGLRTADHLQICQCGNKYFCLFCALHDHIELSLSSSGGVVLPHKLVDNLNYISSYFEKLQQEDAHEFLQCLLDKLGGPCLFLMENNRLACESDNLVKRIFGGRLISKLRCCNCGHLSDKIEPLLDLSLEIENVDSLSGALESFTKVEKIDDPEMIFTCENCREVVSIEKQFMFDEVPSVATFHLKRFKSDGIAVEKIKKPVKFPLELDLKPYTWSARDTDVELRYELYAIVEHVGEASTSGHYISFVRPSPNSWFRLDDSKVTLVPENYVLSQEAYILFYAKKGTPWAYTLMEGQKPRFALIALPMSVPDDSGHREPLIDNRSVDESTEFGCVVFSQSSSHLLSTQPSGAVEEFDNNSGQDALKSGNEENEEHGKLDDSRDTDCFHTLTPAGSPEPDTAILEPQSHCIRRARPKPGKHANAERPRKKVMDNSEKREALRYVQRSMPSARGMKFVAAMLECGGEGSSGKARKRTRTSPCNKSGSPNTRRKHPHNSVARFVAAGN 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2434575 2436887 - Bpe003709.1 Bpe11g00335 110480

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00335 518 Gene3D Cysteine proteinases 1 303 - -
Bpe11g00335 518 SUPERFAMILY Cysteine proteinases 1 297 IPR038765 -
Bpe11g00335 518 MobiDBLite consensus disorder prediction 360 379 - -
Bpe11g00335 518 MobiDBLite consensus disorder prediction 476 518 - -
Bpe11g00335 518 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1 298 IPR028889 -
Bpe11g00335 518 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 392 - -
Bpe11g00335 518 Pfam Ubiquitin carboxyl-terminal hydrolase 1 295 IPR001394 GO:0004843|GO:0016579
Bpe11g00335 518 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 240 258 IPR018200 GO:0004843|GO:0006511
Bpe11g00335 518 PANTHER UBIQUITINYL HYDROLASE 1 1 392 - -
Bpe11g00335 518 MobiDBLite consensus disorder prediction 380 399 - -
Bpe11g00335 518 MobiDBLite consensus disorder prediction 430 450 - -
Bpe11g00335 518 MobiDBLite consensus disorder prediction 360 450 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00335 K11855 USP36_42; ubiquitin carboxyl-terminal hydrolase 36/42 [EC:3.4.19.12] - qsu:112012452 463.766
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00335 Bpe-Chr11:2434575 Bpe14g00489 Bpe-Chr14:4364904 3.67E-38 dispersed
Bpe11g00335 Bpe-Chr11:2434575 Bpe03g00860 Bpe-Chr3:28400383 9.52E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g673 . . . . . . . Bma14g00154 . Cmo16g01210 . . . . Sed02g0114 Cpe14g00962 . Bhi11g00158 Tan01g2190 Cmetu06g2228 . . Mch10g1656 . Cla10g00157 Cam10g0157 Cec10g0167 Cco10g0166 Clacu10g0159 Cmu10g1008 Cre10g0418 Cone8ag0473 Cone12ag0467 . . Lsi07g01196 . . Cme06g02471 Blo03g00860 . Bda07g00098 . . Bpe11g00335 . . . . . . Cma16g01159 . Car16g01099 . . . . . . . . . . . . . . . . . Csa03g00168 Chy06g02145 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003716 1 3 2 2 2 1 1 1 1 1 1 1 2 2 2 1 1 2 1 1 2 2 2 2 1 1 1 4 1 1 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00335 Bpe_Chr11 FPKM 15.13497 17.089249 35.317879 36.711205 12.631698 10.222528 11.327171 99.278427 102.38327 111.314697