Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00360 ATGTTCGACTATAGCTTGCCAATCGCGAGGAGAACTCGGCAAAGACAGGACCAAGTTTACAGCGAGTACTATAAGGAGTTGAAGAAGAGGAATGAAAAGAATTATGGGGTTGATTCTTCCACTGCTAGCGTACCCAGTTCATCTTCGCGTCAGAACCTGCATAAGAATATTAATGGAGTTGATGGGGTTGGGCATAGTTTTTATGATTCGAAACAGGAGAGTTTGGAAGAGAATCGAGTCAATCAATACCGTAAGACACGAGATTATCCTGTGGATTTTATTTCCAGTGAGAGTTCAGTGGCCAGAAATGTGCAGAAATCTGACATTAGAGTTAATGGAAGTGAGAAATGTGACCTAGTTGAAGTAGATAGTAGCAGTGACGAGGTAGTGCTGGTTGATGATGAGGAAGGCGTTGATTCTACACATTCTAAATGTTCGGTTTCGAAGTCTGTTGCTAGTTGTAAAGGTGATGGACTTATTTCTAATGATGTTGATTGTGAGGATGACTCTGGGAATTGTTCAATTTTGAATTCTGCAAATACTAGTAAATGTGAAGAATATATTTCTATTGACGTCGACGATGAGGTTGTTTCTTGGAATTGTTCAATTTTGAATTCTGTAAGTACTGGTGAACGTGAGGTAAATGTTTCTGGGGATGTTAATGATGAAGTTTCTGGCTATGTTGATCATGACAATGAGGCTAATGAATCCGAAGAAGTAGAATCATCATCCAGTGAGAGTGAAGGAGATGATATGAGTGATATGGATTATAAAGAGGATGAACCCGAGCAGTCACAAAGTTCAGACTCCTCGGAGACATCTTTGAGTGGGGAAAGAGGGAGGAAGAAGACTGTCGAATATGAGGCAAAGAGGGGTTTTGAAGTAGCGAGAAAGGGAGAAAAGTTTGGCTTTGGACTAAAAAGGAAGAAAGCATATGGGTTGGACGTGTTAGTAGATAGTGATATCAACGAGCTTGATGGGCAAAAAAATGAAGATAGTGAGGTTAATATCAGTCCGGAAGGTAAGTGCGTGGCAAGGAGAACTCGCTCAAATTCTAGTTCTAAATTTAAAAAGAACACAGAGCCTGGAACTTTGCATAATCCATTTTGTTTTAGTGAAGACGATGAGATTTGTTCCCCATCGGGTGATGATGAGGTTGAGGATGACACTGATTCTGATGCTTATGAAATTGAAGGCATAGGTAAAAGATCTCATAAAAGCAGGAAAAAATCAGATTCGAACCAGAACAAGCATTGTGAAATGGACGACAAAGGTAAAAAATCTCACACAAGAAAGAAAAAAGCAGATTTGAACCAGAACAAGTACGCTAAAATTGACCATGAAACTTATCAGGTTCGTCTGAAAGCTGGTGCTGAGAAATGGGAATCAAAAACAAACAATGGCAGTTATTTTCCTTCTAAATCTTGTGATGATGAATTGAAATCTAGAACAAATGATGCCAATGTTTGTGATGTTCAAATAAAAAACAGGAGAGATAGCAGTGAGTTTCATTCAAAGGCTTTCTCTGATAAATGGAAATCCGGAAAAAATGAAGCCAATGTTTGTGACATTTCCGAGAAAGAGAGTAGGGATAGCGATGAGGAGTTCACTTTGAAAAAACACAACAGGGGAAGCAAAAATTTGGATGTATTCAATATTCTTGCGGATTCAATTTTCAAAGGTGAAGACTTGCCTTTAGACTTGAAGGGTTGTCCTACCATTCATGTCTCCAATAACGAGGGACATGAAAGTGGTTCCCTTCCACTGAAATTCAAATTCGGTGTTGAGGAATCTATTGTGCCAAAAAAATTAGAGGAACTTGAGTTGGATGACCTTTGGGCTGAGCTTGACTTTTGTCTTAGATCCAGTGAGATGGGTTCTCTTCAGTCTGATTTGCAAGCCGAAATTCTGGAGGTGCCTCCTTCACATAGTGACTTTGACCAATCCACCACCTGTGCTCGAGGTGTTCATCATCTTGTTCTCGATGAAGAAATTGGAGTTAGATGTATGCTATGCTCATATGTGAAACTGGAAATCAAGTATATGACGCCTTCTTTTGACGCATATCAATTTGGAAAGCCAATCAGGAGATATCATGGCCCTAAAGACGGCTTCACCTTTAATGATCTTCATAATGATGATTCTAGTGGTGATTTTCATGTTAAATCCGATTCTCACGATTACAGTGATGGAACAGTCTGGGACATTATTCCAGGAATCAAGAAGGGTATGTATCCCCATCAATGTGAAGGCTTTGAATTTCTTTGGAAAAACATAGCTGGAGGAATTCATCTAAAAAAGTTAAGAGGTGGAAAGAGCTCTGATGAGGGAAGCGGATGCATTATTTCTCATGCCCCTGGGACAGGGAAAACCCGTCTAACCATTGTTTTTCTTCAGACTTATATGGAATTGTATCCAACTTGCCGGCCAGTCATTGTTGCACCTCGGAGTATGCTTCTTACATGGGAAGAGGAGTTTCGGAAGTGGAAGGTGGGAATTCCTTTTCATAACCTTAACAAGACAGCTCTATCTGGCAATGAAAGCTTGGCTGCTCTTCAAATGTTGAGCCAGGACAGACAACCAAGCCAAAATATCACCAATGTTCGAATGGTGAAGCTGTATTCATGGAAAAATGAAAAAAGCATCCTGGGAATAAGCTACAGGTTGTTCGATAAACTCGCTGGTGCAAGGGTGAATTCTGAGCGGGAGAAGGTGAGGCAAATCCTTCTCGAGTTTCCAGGAATTATATTTTTTGACGAGGGCCACATTCCGCGAAATGACGATAGTTTGATTTGGAGGACTTTAACGAAATTGAAGACAGAAAAGCGGGTCATCCTCTCAGGAACTCCTTTTCAGAACAATCTCACAGAGTTCTATAATACACTGAGGTTGGTGAGGCCTAAGTTTGCTCAGGCGAAGGGTGAGGTTTTGGAGAAAAAGCGTGGCCGTAAGAGAAAAGCATCTAGAGGAAAGTGGGACTCCCTAATCAGTCATATCGGCAAAGATGCTGATGATACGATCGAACGGGCCAAGTTGAAAGAAGTTCGAGAGATGATCGACCCATTTGTGCACATCCACAGGGGGACCATACTTCAGGAAAGACTAAAGGGGCTGAGGAATTCAGTTGTCATATTACAACCAGCAGAATTGCAGGGCAGTATCCTTCAATGCATAAAAGAAGTACAGAATCCTTTGGAACTGGATTACTTTGAGGCTTTGATCTCTGTCCATCCATACCTTTTTCTCAAATTTAACAGAGGCAAATGTCCTGTTGACATGGTTGTGTTAGAAAAGCTTCGCTTGAATGTAGATTCAGGTGTGAAAATGAAGTTTATTATGGAACTCATTCGGCTCAGTGAACCTCTTAATGAGAAAGTTTTGATTTTCAGCCAATATCTCGACCCTTTGTCCTTCATAAGGGAACACTTGGAATCACATTTTAGTTGGAGTGAAGGAAAAGAGGTGTTATGCATGGATGGAAAACGTAATATACAGATGCGACAAACTTCAATCAATATTTTTAACGATCCAACTAGCGAAGCAAGAGTATTACTGGCATCAACAAGGGCTTGCTCAGAAGGTATAAATCTGGTTGGAGCTTCAAGGGTAGTTTTACTTGATGTTGTATGGAATCCATCTGTTGAAAGACAAGCTATTTGTCGTGCTTACCGACTAGGCCAAGAAAAACTCGTATATACCTATCATCTCATTGCATCAGGTACTGGAGAAGGTGACAAATACGATAGACAAGTGGAGAAAGATCGTATTTCAGAGATGGTTTTCTCGTCTTCGGCCAAGGACCAGGAAGTCTCACCTTCAGCTTTGGATGATAAAATATTGGAGGCTATGGTTTTATCTGATAAGATCAAACATATATTTAAAAACATTAGGCATGTATCAAAGGAGTCGAATTTAATTGAGAATTTTGGGTTGGTGGAAAAGCAGGGAGACCAATCTTCACCATCTTGA 3969 40.41 MFDYSLPIARRTRQRQDQVYSEYYKELKKRNEKNYGVDSSTASVPSSSSRQNLHKNINGVDGVGHSFYDSKQESLEENRVNQYRKTRDYPVDFISSESSVARNVQKSDIRVNGSEKCDLVEVDSSSDEVVLVDDEEGVDSTHSKCSVSKSVASCKGDGLISNDVDCEDDSGNCSILNSANTSKCEEYISIDVDDEVVSWNCSILNSVSTGEREVNVSGDVNDEVSGYVDHDNEANESEEVESSSSESEGDDMSDMDYKEDEPEQSQSSDSSETSLSGERGRKKTVEYEAKRGFEVARKGEKFGFGLKRKKAYGLDVLVDSDINELDGQKNEDSEVNISPEGKCVARRTRSNSSSKFKKNTEPGTLHNPFCFSEDDEICSPSGDDEVEDDTDSDAYEIEGIGKRSHKSRKKSDSNQNKHCEMDDKGKKSHTRKKKADLNQNKYAKIDHETYQVRLKAGAEKWESKTNNGSYFPSKSCDDELKSRTNDANVCDVQIKNRRDSSEFHSKAFSDKWKSGKNEANVCDISEKESRDSDEEFTLKKHNRGSKNLDVFNILADSIFKGEDLPLDLKGCPTIHVSNNEGHESGSLPLKFKFGVEESIVPKKLEELELDDLWAELDFCLRSSEMGSLQSDLQAEILEVPPSHSDFDQSTTCARGVHHLVLDEEIGVRCMLCSYVKLEIKYMTPSFDAYQFGKPIRRYHGPKDGFTFNDLHNDDSSGDFHVKSDSHDYSDGTVWDIIPGIKKGMYPHQCEGFEFLWKNIAGGIHLKKLRGGKSSDEGSGCIISHAPGTGKTRLTIVFLQTYMELYPTCRPVIVAPRSMLLTWEEEFRKWKVGIPFHNLNKTALSGNESLAALQMLSQDRQPSQNITNVRMVKLYSWKNEKSILGISYRLFDKLAGARVNSEREKVRQILLEFPGIIFFDEGHIPRNDDSLIWRTLTKLKTEKRVILSGTPFQNNLTEFYNTLRLVRPKFAQAKGEVLEKKRGRKRKASRGKWDSLISHIGKDADDTIERAKLKEVREMIDPFVHIHRGTILQERLKGLRNSVVILQPAELQGSILQCIKEVQNPLELDYFEALISVHPYLFLKFNRGKCPVDMVVLEKLRLNVDSGVKMKFIMELIRLSEPLNEKVLIFSQYLDPLSFIREHLESHFSWSEGKEVLCMDGKRNIQMRQTSINIFNDPTSEARVLLASTRACSEGINLVGASRVVLLDVVWNPSVERQAICRAYRLGQEKLVYTYHLIASGTGEGDKYDRQVEKDRISEMVFSSSAKDQEVSPSALDDKILEAMVLSDKIKHIFKNIRHVSKESNLIENFGLVEKQGDQSSPS 1322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2702473 2714202 + Bpe003734.1 Bpe11g00360 110505

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00360 1322 MobiDBLite consensus disorder prediction 234 258 - -
Bpe11g00360 1322 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1114 1271 IPR001650 -
Bpe11g00360 1322 Gene3D - 1071 1315 IPR027417 -
Bpe11g00360 1322 SMART ultradead3 740 979 IPR014001 -
Bpe11g00360 1322 MobiDBLite consensus disorder prediction 345 361 - -
Bpe11g00360 1322 MobiDBLite consensus disorder prediction 275 290 - -
Bpe11g00360 1322 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 358 1310 IPR044567 GO:0080188
Bpe11g00360 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 914 1264 IPR027417 -
Bpe11g00360 1322 SMART helicmild6 1137 1226 IPR001650 -
Bpe11g00360 1322 MobiDBLite consensus disorder prediction 324 442 - -
Bpe11g00360 1322 MobiDBLite consensus disorder prediction 413 442 - -
Bpe11g00360 1322 Pfam Helicase conserved C-terminal domain 1108 1226 IPR001650 -
Bpe11g00360 1322 MobiDBLite consensus disorder prediction 30 61 - -
Bpe11g00360 1322 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 771 968 IPR014001 -
Bpe11g00360 1322 MobiDBLite consensus disorder prediction 212 290 - -
Bpe11g00360 1322 Pfam SNF2-related domain 775 979 IPR000330 GO:0005524|GO:0140658
Bpe11g00360 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 724 973 IPR027417 -
Bpe11g00360 1322 Gene3D - 715 1000 IPR038718 -
Bpe11g00360 1322 MobiDBLite consensus disorder prediction 377 394 - -
Bpe11g00360 1322 MobiDBLite consensus disorder prediction 36 56 - -
Bpe11g00360 1322 CDD SF2_C_SNF 1097 1237 - -
Bpe11g00360 1322 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 358 1310 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00360 K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-] - csv:105435045 939.102
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g00872 Bpe11g00360 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g01796 Bpe-Chr4:23436153 Bpe11g00360 Bpe-Chr11:2702473 2.53E-108 dispersed
Bpe11g00360 Bpe-Chr11:2702473 Bpe05g00365 Bpe-Chr5:17726679 2.78E-35 dispersed
Bpe07g00454 Bpe-Chr7:6533488 Bpe11g00360 Bpe-Chr11:2702473 6.79E-93 transposed
Bpe11g00360 Bpe-Chr11:2702473 Bpe08g00872 Bpe-Chr8:11116354 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g573 . . . . . . . . . . Cma02g01579 . Car02g01343 . . . Cpe05g00211 . . . . . . . . . . . . . . Cone8ag0437 Cone12ag0422 . . . . Chy04g00035 . . . Bda07g00129 Bda09g00688 Bpe08g00872 Bpe11g00360 . . Sed01g4061 Cmo02g01621 Cmo19g00395 . . . . . . Bhi05g00566 Tan07g1908 Cmetu04g1824 Lac11g2350 Hepe06g1725 . . Cla09g01200 Cam09g1268 Cec09g1282 Cco09g1316 . . Cre09g1228 . Csa03g04668 . Cme04g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005251 3 2 0 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 3 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22028 PF00176 SNF2_N 1.10E-17 CL0023 Bpe TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00360 Bpe_Chr11 FPKM 13.134875 15.988208 18.22497 17.384804 19.727743 20.537357 20.364086 19.154312 18.61521 17.45719