Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00364 ATGGCTGATTCAAACGGTGCTTCTTATTCCACTGGTTCTCCCAGTTTCCACATTCCTGTGAAGCGAGTAGGCACTCACAATGGAAGCTTTCACTGCGATGAAGCTCTCGGTTGCTTCATGATTCGCCTCACTGACAAATTCTCTAACGCTCAAATTTTTAGGACCAGAGATCCTCAGGTGTTGGAGGGTCTCGATGCTGTTCTTGATGTTGGGGGCGTGTATGATCCAACTCATGATCGGTATGATCATCATCAGAAAGGGTTTGATGAGGTTTTTGGTCATGGCTTCTCAACCAAGCTCAGCAGTGCTGGTCTTGTTTATAAGCACTTTGGAAAGGAAATAATTGCCAAAGAGCTTCAGGTTGATGAAGGGCATCCAGATGTGCATAGGCTATTCTTGGCTCTGTATAAAAGTTTCATGGAGGCAATTGATGCTGTCGACAATGGTATCAATCAATATGATGTAGACCAGCCTCCGCGATATGTTAACAACACACACTTATCTTCCAGAGTGGGAAGGTTGAATTTGGATTGGATAAATCCTGATCAATCTCCAGAGAAAGAGAATGAAGCCTTTGACCGAGCAATGACACTAGCTGGCAGTGAGTTTTTAGATAGTCTTAGGTATCATGCAAATTCTTGGCTACCAGCAAGGTCAATTGTGATGGAGTGTCTCATGGCAAGAAAGAACATTGATCCCAGTGGAGAAATTATGGTTTTAACGACATTTTGTCCTTGGAAACTTCACTTATTTGAGCTTGAAGAGGAGATGAAGATTGAGCCTTTGATAAAATATGTTCTCTATCAGGATGACAGGAGTGGGCATTGGCGTGTGCAGGCAGTGGCGGTGTCACCTGATAAATTTGAAAGCAGGAAGGCTTTGGCCGCCCAATGGCGAGGCTTGAGAGACGAACATCTCTCAAAGGAAGCAGGGATTAGTGGCTGCGTGTTTGTGCATATGAGTGGTTTTATTGGTGGAAATCAAACCTATGAAGGCGCACTTGCCATGGCAATAGCTTCTTTGAAGCTTTGA 1032 44.19 MADSNGASYSTGSPSFHIPVKRVGTHNGSFHCDEALGCFMIRLTDKFSNAQIFRTRDPQVLEGLDAVLDVGGVYDPTHDRYDHHQKGFDEVFGHGFSTKLSSAGLVYKHFGKEIIAKELQVDEGHPDVHRLFLALYKSFMEAIDAVDNGINQYDVDQPPRYVNNTHLSSRVGRLNLDWINPDQSPEKENEAFDRAMTLAGSEFLDSLRYHANSWLPARSIVMECLMARKNIDPSGEIMVLTTFCPWKLHLFELEEEMKIEPLIKYVLYQDDRSGHWRVQAVAVSPDKFESRKALAAQWRGLRDEHLSKEAGISGCVFVHMSGFIGGNQTYEGALAMAIASLKL 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2749258 2752726 - Bpe003739.1 Bpe11g00364 110509

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00364 343 Pfam Uncharacterised protein family (UPF0160) 23 341 IPR003226 -
Bpe11g00364 343 PANTHER METAL DEPENDENT HYDROLASE - RELATED 13 342 IPR003226 -
Bpe11g00364 343 PANTHER METAL-DEPENDENT PROTEIN HYDROLASE 13 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00364 K25877 MYG1; MYG1 exonuclease [EC:3.1.-.-] - qsu:112025306 610.527
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g226 . . . . . . . Bma14g00106 . . Cma02g00937 . Car02g00686 . . . Cpe05g00776 . . . . . . . . . . . . . . . . . . . Csa05g00174 Chy09g01323 . Blo03g00809 . Bda07g00147 . . Bpe11g00364 . . . Cmo02g00947 . . . . . . . Bhi12g00096 . . . . . Lcy12g1531 Cla01g00154 Cam01g0159 Cec01g0155 Cco01g0161 Clacu01g0154 Cmu01g0154 Cre09g2352 . . . Cme09g01871
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007612 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 2 2 2 2 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00364 Bpe_Chr11 FPKM 5.099683 4.948829 4.561723 3.606321 5.923565 4.665688 5.994429 1.8356 1.627679 1.497547