Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00371 ATGAAAATGGAGGTCTTTCAAATTTCTAATTCTAATCTGCTTTTTGTAACTTTCTTTCTCTCAACGATCACTTTTCCGTGTCATTCCTTCACTTCGTTCGTGTTCGGGGATTCCCTCGTCGACGCCGGGAACAATAACTACATATTTACCCTCTCGAAGGCAGATTTAGCTCCTTATGGCATCGACTTCAAGGCCTCCGGCGGCCAACCCACAGGAAGATTTACCAATGGTCGAACTATTTCGGATATTGTTGGGGAATCTCTAGGAGCAGCCTCTTTCCCTCCACCCTACTTGGCACCAAATACGAAAAATGAGGCAGCGATTCTGAGAGGAATCAATTACGCTTCAGGAGCCTCTGGAATTCTGGATGAAACTGGCTTCATTTTCTTGGGAAGAATTCCACTGAGGGTACAAGTGAATAATTTCGAGGAAACTAGGGCTTACTTGGTTCAAACAAAAGGGGAGAATGAAACAAATGAGTTACTAAAAAAGGCAATCTTTTCTCTAACCATTGGATCAAACGATGTCCTTAACTCTATCCAACCCTCCATTCCATTTTTCACTGATTATGAGGCTAAGGACTTCTCCACTATTCATCAAGACACTATGATTTCAAACTTGACCTTAAACCTTAAGCGATTGCATAAGTTAGGGGCAAGAAAATTTGTTGTAGTTGGGATTGGACCTTTAGGATGCATACCCTTTGTACGTGCATTGAAGTTGCAAGCAAGTGGAGAATGCTCAGCTGAAGTGAATAGCTTAATTCAAGGTTACAACAAGAAACTTCGGAAGATGCTACATCAACTAAACCAAGAACTGGGTCCCGAGGCCATCTTCATTTACGCCAATTCCTACGATATTGTCACGAAGATTATAGCTAATTTTTGCCAATATGGGTTCGAGAATGCCAATGAGCCTTGTTGTGGGGGATACTTCCCACCCTTTGTTTGCTTTAAAAATCGGAAAGAGAACACGTCATCTTCATTGTGTGAGGATCGATCAAAGTACGTGTTTTGGGATGCATACCACCCCACAGAAGCTACGAACATAATCATTGCCAATGAGTTAATAAATGGTGATCCAAGTATTGTGTTTCCGATTAACATCTTACAACTTTTCAATTATCTGTCCTAG 1134 41.45 MKMEVFQISNSNLLFVTFFLSTITFPCHSFTSFVFGDSLVDAGNNNYIFTLSKADLAPYGIDFKASGGQPTGRFTNGRTISDIVGESLGAASFPPPYLAPNTKNEAAILRGINYASGASGILDETGFIFLGRIPLRVQVNNFEETRAYLVQTKGENETNELLKKAIFSLTIGSNDVLNSIQPSIPFFTDYEAKDFSTIHQDTMISNLTLNLKRLHKLGARKFVVVGIGPLGCIPFVRALKLQASGECSAEVNSLIQGYNKKLRKMLHQLNQELGPEAIFIYANSYDIVTKIIANFCQYGFENANEPCCGGYFPPFVCFKNRKENTSSSLCEDRSKYVFWDAYHPTEATNIIIANELINGDPSIVFPINILQLFNYLS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2818525 2820274 + Bpe003745.1 Bpe11g00371 110516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00371 377 CDD SGNH_plant_lipase_like 33 360 IPR035669 -
Bpe11g00371 377 Gene3D SGNH hydrolase 29 359 IPR036514 -
Bpe11g00371 377 PANTHER GDSL LIPASE/ACYLHYDROLASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_4G14700) 18 375 - -
Bpe11g00371 377 SUPERFAMILY SGNH hydrolase 162 358 - -
Bpe11g00371 377 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE SUPERFAMILY PROTEIN 18 375 - -
Bpe11g00371 377 Pfam GDSL-like Lipase/Acylhydrolase 33 355 IPR001087 GO:0016788
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00371 - - - mnt:21398453 537.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00760 Bpe-Chr2:5429685 Bpe11g00371 Bpe-Chr11:2818525 6.79E-35 dispersed
Bpe11g00371 Bpe-Chr11:2818525 Bpe02g00252 Bpe-Chr2:1716456 3.68E-81 dispersed
Bpe12g00544 Bpe-Chr12:11296367 Bpe11g00371 Bpe-Chr11:2818525 2.68E-79 transposed
Bpe13g00700 Bpe-Chr13:13609083 Bpe11g00371 Bpe-Chr11:2818525 1.88E-100 transposed
Bpe15g00351 Bpe-Chr15:15054665 Bpe11g00371 Bpe-Chr11:2818525 1.73E-99 transposed
Bpe11g00371 Bpe-Chr11:2818525 Bpe04g01538 Bpe-Chr4:21740924 3.47E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g244 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Csa05g00163 Chy09g01334 . Blo03g00801 . . . . Bpe11g00371 . . . . . . . . . . . Bhi12g00084 . . . . . Lcy12g1518 Cla01g00145 Cam01g0150 Cec01g0146 Cco01g0152 Clacu01g0145 Cmu01g0145 Cre09g2361 Lsi09g00136 . . Cme09g01882
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013076 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00371 Bpe_Chr11 FPKM 3.214375 3.988118 1.266214 0.0 0.0 0.0 0.0 0.0 0.0 0.0