Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00380 ATGGATGCGTTTTCATCGCCCAGTTCCGCTAATTCCTCTCAATTTTCTGCTGATGATCTCAAGGATCAGTTGAAAAATCAGCTTGCGCAAGCGTACGCCGAGGAATTCCTCGAGGTGAAGAACCATGGAGTGCCGGAAGAGATGATCGGGAACATGCTGAATTTGGCGAAGGAGTTTTTTCGGTTACCGGAGAGCGAAAGGATGAAGAGTTACTCCGACGACCCGAGGAAGACAACAAGACTTTCGACCAGTTTTAACGTCAAGACGGAGAAGGTATCGAATTGGAGAGATTTTCTGCGACTCCATTGTTACCCTCTGGAGGACTATGTTCATGAATGGCCCTCAAACCCTCCCTCTTTCCGAAAGCAAGTGGCGGAGTACTGCACCAGCGTGAGAGGACTGGTGCAGAGACTGCTGGAAGCCATGTCGGAGAGCTTGGATCTGGAAAGAGAGTTCATATGGAAGACAGCGATAGGAAAACATGGGCAGCACATGGCGATGAACTACTATCCGTCGTGCCCTCAGCCGGAGCTCACTTACGGCCTACCGTCCCACACCGACCCTAACCTCATCACCGTCCTACTCCAAGACCATGTGCCTGGTTTACAAGTTTACAGAAATGGAAAGTGGGAAGCTGTCAATCCCATCCCCAACACCTTCACCGTCAACATCGGCGATCAAATGCAGGTTCTGAGCAACGATACGTACAAGAGTGTTATTCATCGGGCCGTTGTTAATAGCCTGGTCGAACGGATATCCATCCCGACGTTCTACTGTCCGTCTCCAGATGCACTGATCGGTCCGGCAAAGTGTTTGATAGATTCTGACCGGCCGGCTGTTTATCGAGAATTTACGTACGCCGAATACTACGAGAAATTCTGGAACAGAGGACTCGAATCTCAGTGTTGTTTGGATATGTTCAAAGTGTGA 930 49.68 MDAFSSPSSANSSQFSADDLKDQLKNQLAQAYAEEFLEVKNHGVPEEMIGNMLNLAKEFFRLPESERMKSYSDDPRKTTRLSTSFNVKTEKVSNWRDFLRLHCYPLEDYVHEWPSNPPSFRKQVAEYCTSVRGLVQRLLEAMSESLDLEREFIWKTAIGKHGQHMAMNYYPSCPQPELTYGLPSHTDPNLITVLLQDHVPGLQVYRNGKWEAVNPIPNTFTVNIGDQMQVLSNDTYKSVIHRAVVNSLVERISIPTFYCPSPDALIGPAKCLIDSDRPAVYREFTYAEYYEKFWNRGLESQCCLDMFKV 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2877000 2882784 - Bpe003754.1 Bpe11g00380 110525

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00380 309 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 160 260 IPR005123 -
Bpe11g00380 309 SUPERFAMILY Clavaminate synthase-like 21 298 - -
Bpe11g00380 309 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 22 303 - -
Bpe11g00380 309 Gene3D - 4 297 IPR027443 -
Bpe11g00380 309 PRINTS Isopenicillin N synthase signature 185 206 - -
Bpe11g00380 309 PRINTS Isopenicillin N synthase signature 220 246 - -
Bpe11g00380 309 Pfam non-haem dioxygenase in morphine synthesis N-terminal 14 115 IPR026992 -
Bpe11g00380 309 Pfam 2OG-Fe(II) oxygenase superfamily 163 260 IPR044861 -
Bpe11g00380 309 PANTHER PROTEIN DMR6-LIKE OXYGENASE 2-LIKE 22 303 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00380 K24028 DMR6, DLO; salicylic acid 3-hydroxylase [EC:1.14.11.-] - pop:7489074 478.018
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00380 Bpe-Chr11:2877000 Bpe04g01806 Bpe-Chr4:23495826 1.89E-62 dispersed
Bpe04g00653 Bpe-Chr4:4112182 Bpe11g00380 Bpe-Chr11:2877000 1.66E-69 transposed
Bpe05g01063 Bpe-Chr5:23140119 Bpe11g00380 Bpe-Chr11:2877000 2.46E-60 transposed
Bpe07g00315 Bpe-Chr7:2307822 Bpe11g00380 Bpe-Chr11:2877000 2.43E-56 transposed
Bpe07g00323 Bpe-Chr7:2366765 Bpe11g00380 Bpe-Chr11:2877000 9.85E-61 transposed
Bpe11g00380 Bpe-Chr11:2877000 Bpe08g00912 Bpe-Chr8:11562276 2.41E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g274 . . Bda06g01126 . . . . . . Cmo16g01283 . Cma15g01333 . Car15g01198 . . . . . . . . . . . . . . . . . . . . . Lsi07g01105 . . . Blo03g00789 . . . . Bpe11g00380 . . . . Cmo15g01395 . Cma16g01237 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007284 0 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 1 1 3 2 1 1 1 1 3 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00380 Bpe_Chr11 FPKM 38.843304 48.049522 50.715969 54.096329 70.714745 68.707718 75.780037 88.64669 91.762558 97.388657