Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00385 ATGCGACAGCCACCGTTTCAAGCTGAGGACACGGCTGACCACTCCCCACCAGCATCCCTATGCGGCGGTTCAACTGACTGCGTCTGGCGGCACTCGACTAGATCAAGAGACTTCGAAGCAAACGCAGCAGTCGTCCTCATCCTCGTCCTCTGCGCACTCATATGCGCTCTTGCCCTCAACGCCGGAATCCGCTGCTTCCTCCGCCGCAGTCAGCGTAGCCAGGGAGACCAACCGCCACAGCCGCTTGAGGAGCCAAGCGAAGCACCCAGAGTAACGCCGGTCGCTTATTCATCGGAGATAAAGCCCAAGTTAGCTGGCGGAGAGGCGGAGTGCGCAATTTGCTTGTCGGAGTTTATGGACGGCGAAAGTATTCAGATTCTGGAAGAGTGCAGCCATGGCTTTCACGTAGAGTGCATCCACAAGTGGTTGTGCACCCACTCGTCTTGTCCCACCTGCCGCCACAGCTGCTACTCTTTGTCTCTTCCATCGTCTAAACTCACTGTCGAAAACTGTCACGGTGGCAGAGCTCGGCCTGCCATTACTTCTGCAAGTATTTAG 558 56.45 MRQPPFQAEDTADHSPPASLCGGSTDCVWRHSTRSRDFEANAAVVLILVLCALICALALNAGIRCFLRRSQRSQGDQPPQPLEEPSEAPRVTPVAYSSEIKPKLAGGEAECAICLSEFMDGESIQILEECSHGFHVECIHKWLCTHSSCPTCRHSCYSLSLPSSKLTVENCHGGRARPAITSASI 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2925033 2925590 - Bpe003759.1 Bpe11g00385 110530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00385 185 MobiDBLite consensus disorder prediction 73 93 - -
Bpe11g00385 185 PANTHER RING-H2 FINGER PROTEIN ATL78 13 170 IPR044602 GO:0016567|GO:0016740
Bpe11g00385 185 PANTHER RING-H2 FINGER PROTEIN ATL79-LIKE 13 170 - -
Bpe11g00385 185 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Bpe11g00385 185 SUPERFAMILY RING/U-box 102 158 - -
Bpe11g00385 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 157 IPR013083 -
Bpe11g00385 185 SMART ring_2 111 152 IPR001841 -
Bpe11g00385 185 Pfam Ring finger domain 110 153 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00385 Bpe-Chr11:2925033 Bpe13g00029 Bpe-Chr13:734738 3.20E-29 dispersed
Bpe11g00385 Bpe-Chr11:2925033 Bpe15g01219 Bpe-Chr15:20816861 1.88E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00385 K19040 - csv:101211764 157.147