Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00399 ATGCGTATAGGTTTTGAGGATGACATTCCTCCAGACAAGCTCCTCGCCGGACTTTTGGCTCCGGATTTCGACGATCAATCTTGCTTGAGTCGATACAGAGCGAGCATGTATCGAAAATCCTCTCCTTACAAACCGTCTTCTCATCTCATCTCGAGACTCCGGAAGTACGAAGATCGCCACCGGCTTTGCGGACCGCACTCCAAGTTCTTCAACGAGAGTCTAAAATTGCTTGGAGGCGACAAGAATTTCACGTCTTCGCCGTGCAAGTACGTAATCTTGATGACCCGGGACGGGCTGGGAAATAGAATGCTTGCAATCGCATCGGCGTTTCTCTACACGTTGATCACAGATAGAGTGGTGCTGATTAACCGAGTGGATGTGTTGGACGATCTTTTCTGCGAGCCGTTCGGGGAGAGATCGTGGTTGTTGCCGGAGAATTTTCCAACGAGGGATCAATTCAGGTTCTTTAAGAACTCACTGGGCAACATTTTGAGGGATGATATTCATATCAAACCAAGTGCATTGCCACCATATTTATCTCTCTATCTGTCTCATAATGCTAACAATTATGACAAGCTATTTTACTGCGAAAAACACCAAGCTCTTGTCCAAAACGTCACATGGCTGATAATGGAGACCAACAACTACATAATTCCAGGTCTTTTCCTCATACCCTCTTTTGAAAAACAGTTTTCTAAATTGTTTCCCAGAAAGGATACCGTTTTTCATCAATTGGGTAGATACCTTTTCCACCCTACAAATGATGTATGGGGACTAATCAGTAGATACAACGATGCATACCTGTCAAAAGCGAAGGAGAAACTCGGCATCCAAATCCGGGTTTTCAAATCCGAATCCGGGTCTTTCCAACACCATATGGATCAGATTCTGGCCTGCACTAGATTGGGGAATCTCCTCCCGGAGCTAAACACGACGAGGCGGCAGGCGATTCTCCGGCCGAAGACTCGGAAAACGAAGGCGGTTTTGATAACGTCATTGAGCTCAATGTACCTGGAGAATGCGAAGAAGCTGTACTGGGAATACCCAACTGAAAATGGCGATGTAATTGGGGTTTACCAGCCTAGCCATGAAGATTTTCAGAAAACTGGAGACAGACTTCACAACAAAAAGGCGTTGGCCGAGATTTATCTGCTGAGCCAGAGTGATGTCCTGGTGACGAGCGCTTGGTCTACTTTTGGGTACGTGGCTCAAGGGCTGGCTGGGTTGAAGCCATGGATTCTGTACAAACCGGAGGAGAAGGTTTTCGGAGGGCTCGACGTGGGGTTGAAGTATAAGAATGAGAATGAAACAGAGCATAGTCTGCCGTGTGGGTTGGCGGTGTCGATGGAGCCTTGCTTTCACGCGCCGCCTGTTTGTGAATGTGAGAATTTCGGTAGGCTTGATGACGCCGCTGCTCTTCCTTTCTTGAAACACTGCGAGGATTTGAGCTGGGGCCTTAAGATTGTCGATCGGGATTGA 1479 47.4 MRIGFEDDIPPDKLLAGLLAPDFDDQSCLSRYRASMYRKSSPYKPSSHLISRLRKYEDRHRLCGPHSKFFNESLKLLGGDKNFTSSPCKYVILMTRDGLGNRMLAIASAFLYTLITDRVVLINRVDVLDDLFCEPFGERSWLLPENFPTRDQFRFFKNSLGNILRDDIHIKPSALPPYLSLYLSHNANNYDKLFYCEKHQALVQNVTWLIMETNNYIIPGLFLIPSFEKQFSKLFPRKDTVFHQLGRYLFHPTNDVWGLISRYNDAYLSKAKEKLGIQIRVFKSESGSFQHHMDQILACTRLGNLLPELNTTRRQAILRPKTRKTKAVLITSLSSMYLENAKKLYWEYPTENGDVIGVYQPSHEDFQKTGDRLHNKKALAEIYLLSQSDVLVTSAWSTFGYVAQGLAGLKPWILYKPEEKVFGGLDVGLKYKNENETEHSLPCGLAVSMEPCFHAPPVCECENFGRLDDAAALPFLKHCEDLSWGLKIVDRD 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3049667 3051145 - Bpe003772.1 Bpe11g00399 110544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00399 492 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 422 491 - -
Bpe11g00399 492 PANTHER GALACTOSIDE 2-ALPHA-L-FUCOSYLTRANSFERASE 8 420 - -
Bpe11g00399 492 Gene3D - 85 140 - -
Bpe11g00399 492 Pfam Xyloglucan fucosyltransferase 10 461 IPR004938 GO:0008107|GO:0016020|GO:0042546
Bpe11g00399 492 PANTHER FUCOSYLTRANSFERASE 2-RELATED 422 491 IPR004938 GO:0008107|GO:0016020|GO:0042546
Bpe11g00399 492 PANTHER FUCOSYLTRANSFERASE 2-RELATED 8 420 IPR004938 GO:0008107|GO:0016020|GO:0042546
Bpe11g00399 492 Gene3D - 259 419 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00399 K13681 FUT; xyloglucan fucosyltransferase [EC:2.4.1.-] - csv:101222105 573.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00399 Bpe-Chr11:3049667 Bpe11g01651 Bpe-Chr11:12665607 4.16E-177 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g01651 . 84 566 Xyloglucan Fucosyltransferase1 AT1G14080 54.7 5.4e-154 541.2
Bpe11g01651 . 97 567 Xyloglucan Fucosyltransferase1 AT1G14100 56.1 6.2e-155 544.3
Bpe11g01651 . 94 570 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 8.2e-138 487.3
Bpe05g00368 . 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 1.2e-190 662.9
Bpe07g00377 . 1 511 Xyloglucan Fucosyltransferase1 AT1G49710 63.8 7.7e-190 660.2
Bpe14g00406 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 68.6 1.5e-161 565.8
Bpe11g01651 . 3 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.0 4.7e-180 627.9
Bpe11g01651 . 2 564 Xyloglucan Fucosyltransferase1 AT2G03220 59.8 8.3e-198 686.8
Bpe11g00399 . 8 489 Xyloglucan Fucosyltransferase1 AT2G03220 52.1 1.5e-146 516.5
Bpe11g01651 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15350 51.8 5.4e-143 504.6
Bpe11g01651 . 94 566 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 2.6e-140 495.7
Bpe11g01651 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 5.2e-149 524.6
Bpe05g00368 . 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 63.8 1.8e-188 655.6
Bpe07g00377 . 1 511 Xyloglucan Fucosyltransferase1 AT3G19280 63.5 2.4e-188 655.2
Bpe11g01651 . 3 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.0 4.7e-180 627.9
Bpe11g01651 . 2 564 Xyloglucan Fucosyltransferase1 AT2G03220 59.8 8.3e-198 686.8
Bpe11g00399 . 8 489 Xyloglucan Fucosyltransferase1 AT2G03220 52.1 1.5e-146 516.5
Bpe11g01651 . 3 566 Xyloglucan Fucosyltransferase1 AT2G03210 55.0 4.7e-180 627.9
Bpe11g01651 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15390 53.9 5.2e-149 524.6
Bpe11g01651 . 94 566 Xyloglucan Fucosyltransferase1 AT2G15370 51.8 2.6e-140 495.7
Bpe11g01651 . 84 566 Xyloglucan Fucosyltransferase1 AT1G14080 54.7 5.4e-154 541.2
Bpe11g01651 . 97 567 Xyloglucan Fucosyltransferase1 AT1G14100 56.1 6.2e-155 544.3
Bpe11g01651 . 94 570 Xyloglucan Fucosyltransferase1 AT1G14110 52.3 8.2e-138 487.3
Bpe11g01651 . 99 566 Xyloglucan Fucosyltransferase1 AT2G15350 51.8 5.4e-143 504.6
Bpe05g00368 . 1 512 Xyloglucan Fucosyltransferase1 AT3G19280 63.8 1.8e-188 655.6
Bpe07g00377 . 1 511 Xyloglucan Fucosyltransferase1 AT3G19280 63.5 2.4e-188 655.2
Bpe05g00368 . 1 512 Xyloglucan Fucosyltransferase1 AT1G49710 64.4 1.2e-190 662.9
Bpe07g00377 . 1 511 Xyloglucan Fucosyltransferase1 AT1G49710 63.8 7.7e-190 660.2
Bpe14g00406 . 1 403 Xyloglucan Fucosyltransferase1 AT1G71990 68.6 1.5e-161 565.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007613 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 2 2 2 2 1 1 0 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00399 Bpe_Chr11 FPKM 0.234973 0.0 1.259525 1.269412 0.0 0.0 0.0 1.209194 0.615239 0.818357