Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00434 ATGGATACCCATTTCCATAGCCTACCTCCTCTCAAACGATACCGCATTCTGCAACATCAGCGAGAAGAATTCAATGGAGAACGAATATCGGAACTAGGGCTGGCCGATAGCTCCGTCGACTCGCTTTCTCTTCCGGCGAAGAAGCGAAAGGAGTCTCGAGAATCGACTCCCGCGGATTCTGCCGCCGCCAGAACTGCTGCTCGCACCTCCACCTATTTCCTTCCGGCGAAGAAAAGGATATGGGCCGTTCAGCCAGATTTCGCACTCGAACATGGTTATCTACCATTTGATCTTAATATCGAATATCAACCACAAATGGAGGAAGAAGTAGAAAAAATATCAGCAAAAGAGACCAGTGGTGAGAAAGAGGAAAAGAAAACCCCATCTCCGGCCTATGGAATTGAAGAAATCGATCGAATCAAAGAATTTAAAGATTATGAAAAGGAAGCAAACGAGGATGAAGAAGATGACGGAATTCTCTGTGCAGTTTGTCAAAGCACAGACGGAGATCCATCAGATCCAATCGTCTTGTGTGATGGCTGCGATCTAATGGTCCACGCTTCCTGTTATGGAAACCCATTACTCAAACAAATACCAGAAGGCGACTGGTTTTGTGCCCAATGCTCATCCTCACCTAAAGGTTCTGAAAATGGCGTCTCTTGCAGCCTCTGCCCAACCAAGGGAGGAGCAATGAAGCCAATGAAAGACGGCTCATGGGCTCACATCGTGTGCGTCCTCTTTGTGCCAGAGGCCTTCTTTGAGGATCCAGAAGGGCGAGAAGAGATCAATTGCTCGGCGATTCCGCAAAAAAGGTGGGACCAGAAATGCTGCATCTGTAAAAGCAGGAGTGGGTGCGCTATTGATTGTTCTGAGCCGAAATGTAGTTTGTCTTTTCATGTTACTTGTGGGTTGAATGAAGATCTTTGTATAGAATACAGAGAGGGGAAGAGAAAGGGTGCTGTCGTTGCTGGTTTCTGCAAACAGCATTCTGAACTTTGGAAGAAGGTAAACATTCTGGGACTCTGGTTTTGA 1032 46.71 MDTHFHSLPPLKRYRILQHQREEFNGERISELGLADSSVDSLSLPAKKRKESRESTPADSAAARTAARTSTYFLPAKKRIWAVQPDFALEHGYLPFDLNIEYQPQMEEEVEKISAKETSGEKEEKKTPSPAYGIEEIDRIKEFKDYEKEANEDEEDDGILCAVCQSTDGDPSDPIVLCDGCDLMVHASCYGNPLLKQIPEGDWFCAQCSSSPKGSENGVSCSLCPTKGGAMKPMKDGSWAHIVCVLFVPEAFFEDPEGREEINCSAIPQKRWDQKCCICKSRSGCAIDCSEPKCSLSFHVTCGLNEDLCIEYREGKRKGAVVAGFCKQHSELWKKVNILGLWF 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3300071 3301102 - Bpe003807.1 Bpe11g00434 110579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00434 343 MobiDBLite consensus disorder prediction 41 65 - -
Bpe11g00434 343 CDD PHD_BRPF_JADE_like 160 208 - -
Bpe11g00434 343 Pfam PHD-zinc-finger like domain 220 329 - -
Bpe11g00434 343 PANTHER PHD FINGER PROTEINS 2 116 - -
Bpe11g00434 343 Pfam PHD-finger 161 210 IPR019787 -
Bpe11g00434 343 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 135 335 - -
Bpe11g00434 343 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 2 116 - -
Bpe11g00434 343 SUPERFAMILY FYVE/PHD zinc finger 147 225 IPR011011 -
Bpe11g00434 343 MobiDBLite consensus disorder prediction 43 57 - -
Bpe11g00434 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 332 IPR013083 -
Bpe11g00434 343 ProSiteProfiles Zinc finger PHD-type profile. 158 211 IPR019787 -
Bpe11g00434 343 PANTHER PHD FINGER PROTEINS 135 335 - -
Bpe11g00434 343 SMART PHD_3 160 209 IPR001965 -
Bpe11g00434 343 SMART PHD_3 275 330 IPR001965 -
Bpe11g00434 343 ProSitePatterns Zinc finger PHD-type signature. 161 208 IPR019786 -
Bpe11g00434 343 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 215 IPR013083 -
Bpe11g00434 343 ProSiteProfiles Extended PHD (ePHD) domain profile. 218 330 IPR034732 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00434 Bpe-Chr11:3300071 Bpe14g00362 Bpe-Chr14:3450469 1.58E-08 dispersed
Bpe11g00434 Bpe-Chr11:3300071 Bpe04g00157 Bpe-Chr4:1020471 1.36E-06 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22033 PF13832 zf-HC5HC2H_2 7.70E-29 CL0390 Bpe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00434 K11380 - csv:101203744 405.216