Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00441 ATTTCTTCTCACTCGTCTGCATCGTCGTCTGCTTCTTCGATCATCAATTACCTCTGGATTCCTGTTTTGATGTCTTTCTCCAAAGAGCTCAACCTCGCTAGGGCGGCTCAGCAGTCCAGCATCCTCATGCCGACTCAGCTCCCGCTCGATTCCACTAATTTCGGTCCGAGTTGTCCGGCTTTGAATCCGAAGCTGAATTACCAGCCGGTGATCGGAATTCTTAGCCATCCTGGAGACGGTGCTTCCGGAAGGCTCAGTAATGCGACGAATGCTTCTTATATTGCTGCTTCTTATGTTAAGTTCGTTGAATCGGCTGGGGCTCGTGTTATTCCACTCATTTACAATGAACCGATGGAGATTCTCTTCGAGAAGCTCAATCTGGTCAATGGAGTGCTCTTCACTGGGGGTTGGGCAAAGCGTGGTTTGTACTATTCTGTTGCAGAGAAAATCTTTCTGGAAATTCTTAAGAGGAACGATGCTGGAGACCACTTCCCCTTATATGCTATCTGCTTAGGTTTTGAAATTGTGTCAATGGTCATCAGCAAGGACATGGACATTCTTGAGTCCTTCAATGCATCAGATATGGCTTCTCCTCTCCAATTTGTGGAGAACATAAATGTTAAAGGAACTGTCTTCAATAGATTTCCACCAGATTTGCTTAGAAAGCTGGAGACAGACTGTCTCGTCATGCAAAATCATCGTTATGGTATTTCACCTAGAAGGTTTCAAGAAAATCAGGCATTGTCCAGTTTTTTTAAGATCTTGACAACATGTATGGATGGAGATGATAAGGTTTATGTCTCCACAGTGCAAGGACATTCATATCCCGTGACTGCATTTCAATGGCACCCTGAGAAAAATGCCTTTGAATGGGGTTTTCCAACAATTCCGCACTCAGAAGAGGCCATTGAAGTAACGCAATATGTCGCAAACTATTTGGTCAGTGAGGCTAGGAAGTCGCTTAATAGACCGACTGCTCGGAAAGTCCTTGATAACTTGATCTATAACTACAGTCCAACTTATTGCGGGAAGGCAGGGTATGTCGAACTTTCCTCAATTCCT 1062 44.44 ISSHSSASSSASSIINYLWIPVLMSFSKELNLARAAQQSSILMPTQLPLDSTNFGPSCPALNPKLNYQPVIGILSHPGDGASGRLSNATNASYIAASYVKFVESAGARVIPLIYNEPMEILFEKLNLVNGVLFTGGWAKRGLYYSVAEKIFLEILKRNDAGDHFPLYAICLGFEIVSMVISKDMDILESFNASDMASPLQFVENINVKGTVFNRFPPDLLRKLETDCLVMQNHRYGISPRRFQENQALSSFFKILTTCMDGDDKVYVSTVQGHSYPVTAFQWHPEKNAFEWGFPTIPHSEEAIEVTQYVANYLVSEARKSLNRPTARKVLDNLIYNYSPTYCGKAGYVELSSIP 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3338832 3345922 + Bpe024756 Bpe11g00441 110586

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00441 354 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 84 322 - -
Bpe11g00441 354 PANTHER GAMMA-GLUTAMYL HYDROLASE 1 28 346 - -
Bpe11g00441 354 Gene3D - 64 351 IPR029062 -
Bpe11g00441 354 SUPERFAMILY Class I glutamine amidotransferase-like 90 340 IPR029062 -
Bpe11g00441 354 Pfam Peptidase C26 69 285 IPR011697 GO:0016787
Bpe11g00441 354 PANTHER PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE 28 346 IPR015527 GO:0008242
Bpe11g00441 354 ProSiteProfiles Gamma-glutamyl hydrolase domain profile. 60 354 IPR015527 GO:0008242
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00441 K01307 GGH; gamma-glutamyl hydrolase [EC:3.4.19.9] - zju:107403905 528.094
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g89 Blo03g00704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0202 Cone9ag0233 . . . . . . . . . . Bpe11g00441 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004965 1 2 1 0 1 0 1 1 0 1 0 1 1 1 2 1 1 2 1 1 3 2 1 2 2 2 1 2 3 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00441 Bpe_Chr11 FPKM 23.558756 22.208771 33.426563 30.546003 146.021744 143.863617 141.423401 27.154984 25.717552 28.09569