Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00449 ACAACTAACAAAATGGAGTTTTGCCCATCCATTAAAACGTTGCTCTTTTCCCTCCTCTTTCTGTCGCTTTCTTCTTCGATTTCTCAAGCTTTGGTTCCTGCCAATGAAACCTTCAAGTTCGTCAACTCTGGTGAGTTCGGCCCCTACATCGTCGAATACGACGGCAGTTATCGGGTTCTCAGCGTCTTCACTGCTCCGTTTCAGCTCGCTTTCTACAACACAACCCCTAACGCCTTCACTCTCGCCCTGCGAATGGGTTTGCAGCGGTCGGAGTCGCTCTTTCGCTGGGTTTGGGAGGCGAATCGAGGAAACCCCGTTCGAGAAAACGCTACTCTGAGTTTTGGATCTAATGGGAACCTTGTTCTTGCCAATCCCGACGGGAAAATCGTTTGGCAGACGAACACCGCGAACAAAGGAGTCGTCGCGTTCAGATTGCTCGCGACTGGAAACATGGCCCTTATTGATTCTAAAGGTAAATTCGTTTGGCAGAGCTTTGATTATCCTACGGACACTCTTTTAGTCGGGCAATCGCTCCGATTAGGCGGTCCGACTCAGCTCGTGAGCCGACTTTCGCCGCAAATCAACGCTAATGGACCTTACAGTTTAGTAATGGAGCCCAAAGGACTAGCTCTGTATCTCAAAAGCGTAAACTCTCAAAAGCCATTGCTCTACTTTTTCTCATCTGAATGGCTTGAAATTAGAACAGGTACCTTAAGCAAGGTGACGTTCCAATCTTCACCAGAAAACGACGACGCGGCTGCCTACGATTTGACCCTCGATATGGAGGTTGCTAACTCCTCCACTGCAGGAAATCTAATCCTCGCTAGGCCTAATTATAAAGCACATTTATCATTCCTCAGGCTCGGAATCGATGGAAATCTCAAGATCTACACTTACTACGGTGAAGTGGACAGCAGCGCCTGGGAAACCACATTCACTCTCTTCGACAGAGAATCAATTTGGGAAACGGAGTGCCAGTTGCCAGAAAGGTGCGGAAAATTGGGGGTCTGCGAGGATAATCAGTGCGTCGCCTGCCCTTTGGAAGCCGGACTATTAGGTTGGAGCAAGAGCTGCGAAGCGAAGAAACTAACCTCCTGCTCTGCAAATTCCTTCCGTTACTACAAAGTGGAAGGCGTAGATCATTTTCTCAGCAAGTACAGGAGAGGAAGCTCAGTGACTGAGAAGAACTGTGGAGATAAATGCAGCAAAGACTGCAAGTGTTTGGGTTATTTCTACAATCGCCAAAGCTCGAGGTGCTGGATCGCTTACGAGCTGAAAACGCTGACAAAAGTGGCGAATTCTACTCATCTTGGTTTCATCAAAGCACCCAACAAGTAG 1338 48.13 TTNKMEFCPSIKTLLFSLLFLSLSSSISQALVPANETFKFVNSGEFGPYIVEYDGSYRVLSVFTAPFQLAFYNTTPNAFTLALRMGLQRSESLFRWVWEANRGNPVRENATLSFGSNGNLVLANPDGKIVWQTNTANKGVVAFRLLATGNMALIDSKGKFVWQSFDYPTDTLLVGQSLRLGGPTQLVSRLSPQINANGPYSLVMEPKGLALYLKSVNSQKPLLYFFSSEWLEIRTGTLSKVTFQSSPENDDAAAYDLTLDMEVANSSTAGNLILARPNYKAHLSFLRLGIDGNLKIYTYYGEVDSSAWETTFTLFDRESIWETECQLPERCGKLGVCEDNQCVACPLEAGLLGWSKSCEAKKLTSCSANSFRYYKVEGVDHFLSKYRRGSSVTEKNCGDKCSKDCKCLGYFYNRQSSRCWIAYELKTLTKVANSTHLGFIKAPNK 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3492633 3493970 + Bpe003821.1 Bpe11g00449 110594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00449 445 PANTHER - 19 445 - -
Bpe11g00449 445 Gene3D - 28 166 IPR036426 -
Bpe11g00449 445 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 213 IPR036426 -
Bpe11g00449 445 Pfam D-mannose binding lectin 97 188 IPR001480 -
Bpe11g00449 445 ProSiteProfiles PAN/Apple domain profile. 366 444 IPR003609 -
Bpe11g00449 445 SMART blect_4 51 168 IPR001480 -
Bpe11g00449 445 ProSiteProfiles Bulb-type lectin domain profile. 16 166 IPR001480 -
Bpe11g00449 445 CDD PAN_AP_plant 365 435 - -
Bpe11g00449 445 PIRSF SLG 5 445 IPR035446 -
Bpe11g00449 445 CDD B_lectin 51 168 IPR001480 -
Bpe11g00449 445 PANTHER SECRETED GLYCOPROTEIN EP1, PUTATIVE-RELATED 19 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00449 - - - fve:101299558 633.254
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00449 Bpe-Chr11:3492633 Bpe11g00472 Bpe-Chr11:3652264 5.47E-106 dispersed
Bpe04g01545 Bpe-Chr4:21801586 Bpe11g00449 Bpe-Chr11:3492633 1.22E-24 transposed
Bpe14g01279 Bpe-Chr14:9675920 Bpe11g00449 Bpe-Chr11:3492633 9.95E-57 transposed
Bpe11g00449 Bpe-Chr11:3492633 Bpe08g00997 Bpe-Chr8:12309708 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g115 . . . Bda09g00539 . . . . Cmo16g00478 . . Cma09g00816 . Car09g00733 . Cpe06g00651 . . . . . . . . . . . . . . . . . . . . . . . . . Bda05g00788 . Bpe11g00449 . . . . . Cmo09g00811 . Cma16g00443 . . Cpe14g00373 . . . . . . . . . . . . . . . . Csa04g00802 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004202 2 4 3 2 3 1 0 1 1 2 1 1 1 1 2 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00449 Bpe_Chr11 FPKM 0.815378 1.080039 1.251417 0.735852 2.840811 2.519154 2.603648 1.308811 0.814866 1.227809