Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00451 ATGGTTGGTGTAAGTCAAGGGAACAAAAGTGCCCTCGGACGAGTTACTCTGATAAATAAATGGGGGAATGTAATGTATGATGAGTTTGTCCGTCCGGTAGAGCGTGTAGTTGACTTCCGTACTCAAATTAGTGGAATACGACCGCGAGACTTAAGAAAAGCCAAGGATTTTCGTGTTGTACAGAAGAAAGTGGCAGAGTTGATCCATGGAAAGATTCTTGTTGGCCATGCCTTACGCAATGATCTTAAGGCATTATTACTAAGTCATCCGAAGAGAGATTTGCGTGACACATCGGAGTATCATTTCTTTCAGAAGGAAGGGTCGAGAAGGGCTCTTAAGCATCTTGCAGCTGAGTTTCTTGGAGTAAAGATCCAAAATGGAGAACACTGTCCCATAGAAGACGCGAGGGCAGCAATGTTGCTCTACCAGAGAAATAGGAAAGAGTGGGAAAAGAGCGAAAAAGACAAGACAAGGCTGAAACAGAAGCAGAAAGAGAGGAAACGCAAACCCAAGAAGAAACTAAACAAGAGCGTTGTTTTGAATGGTAATTTATCTTCAAGATAG 564 42.73 MVGVSQGNKSALGRVTLINKWGNVMYDEFVRPVERVVDFRTQISGIRPRDLRKAKDFRVVQKKVAELIHGKILVGHALRNDLKALLLSHPKRDLRDTSEYHFFQKEGSRRALKHLAAEFLGVKIQNGEHCPIEDARAAMLLYQRNRKEWEKSEKDKTRLKQKQKERKRKPKKKLNKSVVLNGNLSSR 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3517824 3519856 - Bpe003823.1 Bpe11g00451 110596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00451 187 SUPERFAMILY Ribonuclease H-like 2 143 IPR012337 -
Bpe11g00451 187 MobiDBLite consensus disorder prediction 161 175 - -
Bpe11g00451 187 CDD REX4_like 1 143 IPR037431 GO:0006364|GO:0008408
Bpe11g00451 187 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 1 172 - -
Bpe11g00451 187 PANTHER RNA EXONUCLEASE 4 1 172 - -
Bpe11g00451 187 SMART exoiiiendus 1 151 IPR013520 -
Bpe11g00451 187 Coils Coil 132 152 - -
Bpe11g00451 187 Gene3D - 1 169 IPR036397 GO:0003676
Bpe11g00451 187 MobiDBLite consensus disorder prediction 149 187 - -
Bpe11g00451 187 Pfam Exonuclease 11 142 IPR013520 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00451 K18327 REXO4, REX4; RNA exonuclease 4 [EC:3.1.-.-] - zju:107432521 276.944
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe09g00492 Bpe-Chr9:13447681 Bpe11g00451 Bpe-Chr11:3517824 9.93E-26 dispersed
Bpe10g00209 Bpe-Chr10:7541054 Bpe11g00451 Bpe-Chr11:3517824 2.63E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g155 . . . . . . . . . . . Cma09g00835 . Car09g00750 . Cpe06g00666 . Bhi09g03475 . . . . Mch11g1035 . Cla11g01730 . . . . . . Cone6ag0176 Cone9ag0201 . . Lsi04g02039 . . Cme07g00559 . . . . Bpe11g00451 . . . . . Cmo09g00830 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013924 1 3 0 1 1 0 1 0 0 0 1 0 1 1 1 1 0 2 1 0 0 1 1 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00451 Bpe_Chr11 FPKM 12.487879 14.552392 0.217661 0.528729 0.0 0.0 0.0 0.865554 0.729268 0.487516