Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00463 ATGGCTGATGCTGCGATGATATCTGAGGCTGCAGGATCAAGGTTTAGTTCTTTGGAGCTCATTGGAAGGGGATCATTTGGAGACGTCTACAAGGGGTTTGATAAGGAGCTCAACAAAGAAGTTGCCATAAAAGTTATTGATTTAGAAGAATCAGAAGATGAAATTGAGGATATTCAGAAGGAAATTTCTGTATTATCACAATGTCGATCTCCTTATATCACAGAGTATTACGGTTCTTATCTTAACCAGACTAAATTATGGATAATAATGGAATACATGGCTGGCGGCTCTGTTGCAGACTTGCTTCAATCAGGTCCACCTTTGGATGAAATGGCGATTGCTTGCATTCTACGTGACTTGCTGCATGCTGTTGATTATTTACACAATGAAGGAAAAATCCACCGGGATATCAAAGCGGCAAACATTTTGTTGACGGAGAATGGTGATGTGAAGGTTGCAGATTTTGGTGTTTCTGCGCAATTAACTAGGACAATTTCAAGGAGAAAGACATTTGTAGGAACACCGTTTTGGATGGCACCAGAAGTAATTCAAAATTCAGAAGGATATAACGAGAAGGCAGATATCTGGTCTCTTGGAATCACTGCTATTGAGATGGCAAAAGGGGAGCCTCCTCTTGCGGATCTTCATCCAATGAGAGTTCTTTTTATCATACCTCGGGAGAATCCACCTCAGTTGGATGAGCATTTTTCTCGTCCAATGAAAGAATTTGTATCATTGTGTCTGAAGAAAGTACCAGCTGAGAGGCCAAGTGCCAAGGAGCTTCTAAAGCATCGATTTATTAGAAATGCGAGGAAGAGTCCAAGGCTTCTAGAAAGAATAAGAGAGCGTCCAAAGTACCAAATAAAGGAGGATGCTGAAACGACTAGAAATGGTCCTAGAGATAAGGGGGAGATGTCTGACACAGTCAAGGCACCTAGAAGTTTACTAAGAGAAGAAAATGTGCATATCAGTAATCAGGGTAAAACCACAAAAAATGCTGGATGGGATTTTAGCATTGGTGGCTCACATGGAACAGGTACAGTTCGAAGTATTGTTAAACCACCTCAATTTGGAGAAAAGAAACCTGAAGTTCCCCTCTCTGGTGGAAACCTACGGTTTGCTGCCTATGGGAATGCACTTCGTGATGCCCCTGAAGATTTTTTTACCAAGGATGCTCGAGATTTATACCATGATAAACGTCGGGAAGATAATAGTGATGATGAAGAGTTATCAGTAAGTGGATACGGAACTGTTGTGATTCGATCTCCCCGAGGATCTCAGTCGACTGAGTTCTTTACTCAAACCAATATGTCAGGGAGCACTTATGCATCGTTTGAAGATGCTTCATCTAGTGGAACTGTAGTTATTCGCGGGCAACATGATGATACAGATTCTCCCCGAACTCCAAAGTCCAGACTTGGCCTTCAGGATAGGACTTCGACAGCCTCATTTGAAGACAGTGAATTAAACCTTTCAGAGGCAAAGGCTGCAATTCAAGCAGGGTTAAAGAAATCAAATGTTAGAGAAAGGTCTGCGCTTGGAAAAATTAATGATGATGGGAAGGAGAATCGAAGAAGAGGGGAAATAACCAGTAGCTTTGATTCTTCCAGACATTATAATGAATACTTGGATGCGCCAAAAGCATTTTCAAGATCGCAACCAGTAACTGAGACTGAAGAAAGTGCAAAAATATTATCATTTTCTGCACCGTTATCTATTTTGCTCATCCCATCTTTGAAGGAGGCTGTTGGGGATGATTCTGAGAGTTTATCTGTCCATGCAATTGCTAATTCTCTCGTAAATATCGAAAACGGGAAGCCTGGATCTTGTGAAGTTCTTGTCAGCAAGCTGCTTCAGCGTTTGGCAAGTTCAAAGGAATCTTCATTGAAAGATCTGCGAGAGCTCGCCAGTAGTATCTTTGCTAGAGAAAAGACGTCACCAATGGCCTCCGAAGAAACTAAAAATTCAACTGTAGATTCTGCCGACAAGAAAAAGCAACAGAGTAAAGACCTGAACTCCAATTCCAATTTAAGCCCCCTTGCTCGGTTTTTGCTCTCAAGATGGCAAGGGCAAGTATCAAGGGATCTCAACCAAGCTTAG 2100 41.71 MADAAMISEAAGSRFSSLELIGRGSFGDVYKGFDKELNKEVAIKVIDLEESEDEIEDIQKEISVLSQCRSPYITEYYGSYLNQTKLWIIMEYMAGGSVADLLQSGPPLDEMAIACILRDLLHAVDYLHNEGKIHRDIKAANILLTENGDVKVADFGVSAQLTRTISRRKTFVGTPFWMAPEVIQNSEGYNEKADIWSLGITAIEMAKGEPPLADLHPMRVLFIIPRENPPQLDEHFSRPMKEFVSLCLKKVPAERPSAKELLKHRFIRNARKSPRLLERIRERPKYQIKEDAETTRNGPRDKGEMSDTVKAPRSLLREENVHISNQGKTTKNAGWDFSIGGSHGTGTVRSIVKPPQFGEKKPEVPLSGGNLRFAAYGNALRDAPEDFFTKDARDLYHDKRREDNSDDEELSVSGYGTVVIRSPRGSQSTEFFTQTNMSGSTYASFEDASSSGTVVIRGQHDDTDSPRTPKSRLGLQDRTSTASFEDSELNLSEAKAAIQAGLKKSNVRERSALGKINDDGKENRRRGEITSSFDSSRHYNEYLDAPKAFSRSQPVTETEESAKILSFSAPLSILLIPSLKEAVGDDSESLSVHAIANSLVNIENGKPGSCEVLVSKLLQRLASSKESSLKDLRELASSIFAREKTSPMASEETKNSTVDSADKKKQQSKDLNSNSNLSPLARFLLSRWQGQVSRDLNQA 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3584914 3593923 + Bpe003835.2 Bpe11g00463 110608

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00463 699 MobiDBLite consensus disorder prediction 469 487 - -
Bpe11g00463 699 SUPERFAMILY Protein kinase-like (PK-like) 12 299 IPR011009 -
Bpe11g00463 699 PANTHER STERILE20-LIKE KINASE, ISOFORM B-RELATED 1 697 - -
Bpe11g00463 699 CDD STKc_MST3_like 13 287 - -
Bpe11g00463 699 MobiDBLite consensus disorder prediction 513 532 - -
Bpe11g00463 699 MobiDBLite consensus disorder prediction 456 487 - -
Bpe11g00463 699 MobiDBLite consensus disorder prediction 346 368 - -
Bpe11g00463 699 MobiDBLite consensus disorder prediction 513 533 - -
Bpe11g00463 699 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Bpe11g00463 699 MobiDBLite consensus disorder prediction 287 311 - -
Bpe11g00463 699 Pfam Protein kinase domain 16 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g00463 699 Gene3D Transferase(Phosphotransferase) domain 1 12 306 - -
Bpe11g00463 699 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 697 - -
Bpe11g00463 699 MobiDBLite consensus disorder prediction 643 676 - -
Bpe11g00463 699 SMART serkin_6 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g00463 699 Coils Coil 41 68 - -
Bpe11g00463 699 ProSiteProfiles Protein kinase domain profile. 15 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00463 K08838 STK24_25_MST4; serine/threonine-protein kinase 24/25/MST4 [EC:2.7.11.1] - vvi:100258981 1012.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00601 Bpe-Chr1:3948403 Bpe11g00463 Bpe-Chr11:3584914 3.50E-40 dispersed
Bpe02g02311 Bpe-Chr2:23775693 Bpe11g00463 Bpe-Chr11:3584914 7.18E-78 dispersed
Bpe11g00463 Bpe-Chr11:3584914 Bpe12g00439 Bpe-Chr12:10156906 4.33E-59 dispersed
Bpe13g01246 Bpe-Chr13:17706733 Bpe11g00463 Bpe-Chr11:3584914 2.03E-41 dispersed
Bpe11g00463 Bpe-Chr11:3584914 Bpe02g01494 Bpe-Chr2:18211836 7.21E-71 transposed
Bpe11g00463 Bpe-Chr11:3584914 Bpe14g00247 Bpe-Chr14:2619583 9.00E-71 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g00463 . 1 699 MAP Kinase Kinase Kinase Kinase AT1G53165 61.5 5.6e-220 760.8
Bpe02g02311 . 223 488 MAP Kinase Kinase Kinase Kinase AT1G53165 50.9 2.9e-67 253.4
Bpe11g00463 . 1 696 MAP Kinase Kinase Kinase Kinase AT3G15220 64.4 3.9e-237 817.8
Bpe02g02311 . 223 488 MAP Kinase Kinase Kinase Kinase AT3G15220 50.2 8.4e-67 251.9
Bpe02g02311 . 9 792 MAP Kinase Kinase Kinase Kinase AT1G69220 56.2 6.3e-223 770.8
Bpe11g00463 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.8 1.8e-68 257.7
Bpe14g00247 BCT 1 589 MAP Kinase Kinase Kinase Kinase AT5G14720 67.0 1.9e-225 778.9
Bpe02g01494 BCT 1 595 MAP Kinase Kinase Kinase Kinase AT5G14720 64.3 1.1e-215 746.5
Bpe10g00590 BCT 3 352 MAP Kinase Kinase Kinase Kinase AT5G14720 69.7 7.8e-150 527.7
Bpe06g00667 BCT 3 352 MAP Kinase Kinase Kinase Kinase AT5G14720 69.7 3.9e-149 525.4
Bpe05g00502 . 5 705 MAP Kinase Kinase Kinase Kinase AT4G24100 65.7 1.2e-249 859.4
Bpe14g00247 BCT 6 355 MAP Kinase Kinase Kinase Kinase AT4G24100 66.0 1.8e-136 483.4
Bpe02g01494 BCT 9 355 MAP Kinase Kinase Kinase Kinase AT4G24100 66.6 2.6e-135 479.6
Bpe10g00590 BCT 2 353 MAP Kinase Kinase Kinase Kinase AT4G24100 65.1 9.9e-135 477.6
Bpe06g00667 BCT 2 353 MAP Kinase Kinase Kinase Kinase AT4G24100 64.2 1.9e-133 473.4
Bpe05g00502 . 6 706 MAP Kinase Kinase Kinase Kinase AT4G10730 65.9 1.5e-249 859.0
Bpe14g00247 BCT 7 376 MAP Kinase Kinase Kinase Kinase AT4G10730 64.3 1.7e-139 493.4
Bpe10g00590 BCT 4 360 MAP Kinase Kinase Kinase Kinase AT4G10730 66.1 6.3e-139 491.5
Bpe06g00667 BCT 4 358 MAP Kinase Kinase Kinase Kinase AT4G10730 65.6 1.2e-137 487.3
Bpe02g01494 BCT 9 356 MAP Kinase Kinase Kinase Kinase AT4G10730 67.5 2.7e-137 486.1
Bpe14g00247 BCT 5 351 MAP Kinase Kinase Kinase Kinase AT1G70430 71.8 3.6e-146 515.4
Bpe02g01494 BCT 1 420 MAP Kinase Kinase Kinase Kinase AT1G70430 61.8 3.9e-145 511.9
Bpe06g00667 BCT 4 404 MAP Kinase Kinase Kinase Kinase AT1G70430 55.3 1.1e-128 457.2
Bpe10g00590 BCT 4 364 MAP Kinase Kinase Kinase Kinase AT1G70430 59.3 6.3e-127 451.4
Bpe05g00502 . 2 356 MAP Kinase Kinase Kinase Kinase AT1G70430 59.7 5.2e-121 431.8
Bpe06g00667 BCT 1 378 MAP Kinase Kinase Kinase Kinase AT1G79640 83.3 3.9e-186 648.3
Bpe10g00590 BCT 1 382 MAP Kinase Kinase Kinase Kinase AT1G79640 80.6 7.6e-182 634.0
Bpe14g00247 BCT 4 360 MAP Kinase Kinase Kinase Kinase AT1G79640 69.2 4.5e-150 528.5
Bpe02g01494 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 57.4 6.9e-100 361.3
Bpe14g00247 BCT 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 56.5 2.9e-98 355.9
Bpe10g00590 BCT 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.6 2.3e-87 319.7
Bpe06g00667 BCT 5 324 MAP Kinase Kinase Kinase Kinase AT1G23700 51.4 1.3e-85 313.9
Bpe05g00502 . 14 303 MAP Kinase Kinase Kinase Kinase AT1G23700 51.5 3.3e-78 289.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005838 1 3 1 1 1 0 2 1 0 1 1 1 2 1 1 2 0 3 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63563 PF00069 Pkinase 1.30E-68 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00463 Bpe_Chr11 FPKM 2.141324 2.810879 1.187981 1.050638 0.416833 0.561491 0.590688 0.604491 0.700325 0.924256