Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00466 ATGGCGCCGAGAGATAGATCCGCCCCGCCGGACCCAAACTCTGGTTCCAGCTCTAGGGAAATTAGATATCGAGGCGTGAGGAAGAGGCCATGGGGAAGGTACGCGGCGGAGATTCGCGATCCTGGAAAGAAGACGCGGGTTTGGCTGGGGACCTTCGATACCGCGGAAGAGGCGGCGCGTGCTTACGATGCTGCCGCGCGTGAGTTTCGTGGGTCGAAAGCTAAGACTAATTTTCCTACTCCGTCGGATCTCTTTGGAGTGGATGGAAATCATAACGTAACACGCAGTAGTCCCAGTCAGACCAGCACCGTCGAGTCGTCTTCTCCGCCGCCGCCGTTGGACCTCACTCTTACTCCCGTTTCCATCGCTGCTGGTCGTTTCGCCGGGAGTTGCTATCCTCCCGGATGTTTCCAAGCGGTTACGATGGGCCGTCCGCTCTACTTCGATGCTTTCGCACGTTCAGAGAAGACGAGAGTGAACCACCGGGAAATGCGAAAGTTTTATACTGCGATGGTTTCTGATTTACGGCCGGTCATGGCAGGCGGGGCACAGAGCGACTCCGGTTCGTCGTCGGTGGTCGATTTCAATCAAACCCAAAACATCGGACGATTAGATCTCGACCTTAACCAGCCTCCTCCACCTGAGGTCGCCTAA 654 56.42 MAPRDRSAPPDPNSGSSSREIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGSKAKTNFPTPSDLFGVDGNHNVTRSSPSQTSTVESSSPPPPLDLTLTPVSIAAGRFAGSCYPPGCFQAVTMGRPLYFDAFARSEKTRVNHREMRKFYTAMVSDLRPVMAGGAQSDSGSSSVVDFNQTQNIGRLDLDLNQPPPPEVA 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3616234 3616887 - Bpe003837.1 Bpe11g00466 110611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00466 217 MobiDBLite consensus disorder prediction 87 111 - -
Bpe11g00466 217 MobiDBLite consensus disorder prediction 73 113 - -
Bpe11g00466 217 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Bpe11g00466 217 CDD AP2 22 79 IPR001471 GO:0003700|GO:0006355
Bpe11g00466 217 SMART rav1_2 22 85 IPR001471 GO:0003700|GO:0006355
Bpe11g00466 217 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Bpe11g00466 217 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Bpe11g00466 217 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700|GO:0006355
Bpe11g00466 217 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
Bpe11g00466 217 MobiDBLite consensus disorder prediction 1 26 - -
Bpe11g00466 217 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
Bpe11g00466 217 PANTHER ERF FAMILY PROTEIN 1 205 - -
Bpe11g00466 217 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 205 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00389 Bpe-Chr8:2393308 Bpe11g00466 Bpe-Chr11:3616234 1.86E-35 dispersed
Bpe11g00466 Bpe-Chr11:3616234 Bpe02g01898 Bpe-Chr2:20973702 3.81E-32 dispersed
Bpe01g00438 Bpe-Chr1:2691220 Bpe11g00466 Bpe-Chr11:3616234 9.56E-33 wgd
Bpe11g00466 Bpe-Chr11:3616234 Bpe08g01010 Bpe-Chr8:12407811 1.88E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22036 PF00847 AP2 1.30E-15 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00466 K09286 - zju:107432572 206.453