Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00483 ATGCCGTCTTTCAATCGTGTATCCTTCATTGAATCGGCATCTTGTTCAGATTCTGGGTCTGATTCTATGGAAGATAGATTAACTGACCAAACGATGGAGGTCAATAATTTGTCGTCTCCTCCGTCAAAGAATCTAGCGAGTAAAGAGTTTCAGCTTCCATTGCTCCCAATTAATAGTTTATTAGCAAATTCTTCTTTGGAGTCGAGCTCCCTCCATGTAGCCGGAGAATCGTTGATAGAAGATGCTGGAAAACCAAAAGATAAAGACATTAAAAATGTGAATTTGGCAGAAGAAGGAAAAGCATCCTTTCCAAATAAGCAAATTTTGGTATTGGAGAGTAGTTGGTACACTAGTCCTGAAGAGACTTCTGGCTCCTCAAGTTCTTGTTCTTCCGATATCTACCGTCTGGGAGTCCTTCTCTTCGAGTTATTCTGCCCCTTCTCTTTGCGGGAGGAAAAAATTAGAACTATGTCTAGTCTGAGACATCGAGTTCTTCCTCCTCAATTACTGATGAAGTGGCCCAAAGAAGCTTCATTTTGCCTATGGCTGCTGCACCCTGAACCAAGCTGTCGACCAAAATTAAGTGAATTGTTACAGAGCAAATTCCTTAATGAATGGCGAAATGAGTTTCAAGAGCGAGATGCGGCACTAAAGCTTGAAGAGAGAGTAGAGCAGCAGGAGTTGTTGCTCGAATTTCTTTTGCTCATACAACAAAGGAAGCAAGAAGCCGCCCATAAGTTGCATGATACCATCTCTCTCCTGTATTCAGATATCGAAGACGTATTGAAGCAGCTAAAGATTCGTCACAAGAACAATGATTCCTGTGCCGATCTCGATATCGAAAGTAATGATATATCTGATTCAGGGGCCAGAAAAAGGTTTAGATCAAAAGTTCAAATCCAACAAGATGAAGCATGCAATGAAAATCTCGATGGTAAAGATAAGTCAGAAATAATCGATGAGAGCGAAGGAAAAATTCGTTTGAGACATTCTCGCTTGAGGAATAATTTTAAGAAAATAGAGTCGGTATATTTGTTAATGCGAAGTAGACAAATAAATCAATCGAGAAGATTGTTGAATGGACCTTCACAACCAATAAGTAGTGATGGAAGAGGATCATCCATGGTCGTGAATGAAAGAAGCTCGGGAAGCATTTCAGCTCCAAAAGTGTTGTCTTATGGTAGGCAAGGCGAGTGGATTAATGGGTTCCTCGATGGTTTATGCAAATATCTATCGTTTAGTAAGTTAGATGTTAAGGCCGATTTGAAACAAGGAGATCTCTTAAATTCTTTCAGTCTAGTGTCTACCCTTACCTTTGATCGCGATGGAGATTTTTTCGCTACTGCTGGCATAAATAAGAAAATAAAAGTATTTGAATATGAAGGGATTGTGTCCGAAGATCGTGATATCAATTATCCGGTCGTTGAAATGGTTAGTCGATCGAAGCTGAGCAGTATTTGTTGGAATAGCTACATCAAGTGTCAAATTGCTTCAAGCAATTTTGATGGTATTGTGCAGGTCTGGGATGTTACAAGAAGTCAAGTACTAATTGAAATGCGAGAACATGAAAAACGTGTGTGGTCTGTTGACTTCTCGTCGGCAGATCCAACCATTTTGGCCAGTGGAGGGGATGATGGGTCTGTGAAGTTGTGGAGTATCAATCAGGCAAGCTCTCTTTTCCTTGTTTTGCTATCACTGGATTTCTATTTTCAGGCAAAGAGTATTGGTACAATTAAAACAAAGGCCAATGTTTGTTGTGTTCAATTTCCCTTGGATTCAAGTCGCACCCTATCGTTTGGTTCGGCAGATCATAAAATATATTATTACGATCTCAGAAATCCGAAATTCCCTCTCTGTACGTTTGTTGGGCACAATAAAACAGTGAGTTATGTCAAATTCATCGACTCTGTGACTCTTGTTTCGGCTTCGACCGATAATACTTTACGGCTCTGGGATTTGTCCACGTGCGCATCTGGCACTGTTGACACTCCCATACAATCATACACTGGTCATTTGAATGTGAAGAATTTTGTCGGATTATCTGTCTCCAATGGTTTCATCGCTACTGGTTCGGAGACGAATGAGATTTACGTCTATCACAAAGCATTTCCGATGCCGGTCTTGTCATACAAGTTTCACACAGACCAACTTTCCAACCACGACATCAACGATGCTGCACAGTTTGTCTCTGCCGTTTGTTGGCGTGGCGACTCGTCAACGCTAATTGCCGCAAATTCCACCGGGAACATCAAAGTCCTGGAGATGGCCTGA 2271 41.13 MPSFNRVSFIESASCSDSGSDSMEDRLTDQTMEVNNLSSPPSKNLASKEFQLPLLPINSLLANSSLESSSLHVAGESLIEDAGKPKDKDIKNVNLAEEGKASFPNKQILVLESSWYTSPEETSGSSSSCSSDIYRLGVLLFELFCPFSLREEKIRTMSSLRHRVLPPQLLMKWPKEASFCLWLLHPEPSCRPKLSELLQSKFLNEWRNEFQERDAALKLEERVEQQELLLEFLLLIQQRKQEAAHKLHDTISLLYSDIEDVLKQLKIRHKNNDSCADLDIESNDISDSGARKRFRSKVQIQQDEACNENLDGKDKSEIIDESEGKIRLRHSRLRNNFKKIESVYLLMRSRQINQSRRLLNGPSQPISSDGRGSSMVVNERSSGSISAPKVLSYGRQGEWINGFLDGLCKYLSFSKLDVKADLKQGDLLNSFSLVSTLTFDRDGDFFATAGINKKIKVFEYEGIVSEDRDINYPVVEMVSRSKLSSICWNSYIKCQIASSNFDGIVQVWDVTRSQVLIEMREHEKRVWSVDFSSADPTILASGGDDGSVKLWSINQASSLFLVLLSLDFYFQAKSIGTIKTKANVCCVQFPLDSSRTLSFGSADHKIYYYDLRNPKFPLCTFVGHNKTVSYVKFIDSVTLVSASTDNTLRLWDLSTCASGTVDTPIQSYTGHLNVKNFVGLSVSNGFIATGSETNEIYVYHKAFPMPVLSYKFHTDQLSNHDINDAAQFVSAVCWRGDSSTLIAANSTGNIKVLEMA 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3718950 3723636 - Bpe003853.1 Bpe11g00483 110628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00483 756 CDD WD40 434 752 - -
Bpe11g00483 756 ProSiteProfiles Trp-Asp (WD) repeats profile. 621 655 IPR001680 GO:0005515
Bpe11g00483 756 PANTHER PROTEIN SPA1-RELATED 3 1 755 - -
Bpe11g00483 756 Gene3D Transferase(Phosphotransferase) domain 1 80 215 - -
Bpe11g00483 756 SUPERFAMILY Protein kinase-like (PK-like) 111 216 IPR011009 -
Bpe11g00483 756 ProSitePatterns Trp-Asp (WD) repeats signature. 639 653 IPR019775 -
Bpe11g00483 756 SMART WD40_4 661 700 IPR001680 GO:0005515
Bpe11g00483 756 SMART WD40_4 512 552 IPR001680 GO:0005515
Bpe11g00483 756 SMART WD40_4 614 652 IPR001680 GO:0005515
Bpe11g00483 756 SMART WD40_4 470 509 IPR001680 GO:0005515
Bpe11g00483 756 SMART WD40_4 424 459 IPR001680 GO:0005515
Bpe11g00483 756 SMART WD40_4 571 610 IPR001680 GO:0005515
Bpe11g00483 756 SMART WD40_4 703 754 IPR001680 GO:0005515
Bpe11g00483 756 ProSiteProfiles Trp-Asp (WD) repeats profile. 519 561 IPR001680 GO:0005515
Bpe11g00483 756 Gene3D - 405 756 IPR015943 GO:0005515
Bpe11g00483 756 SUPERFAMILY WD40 repeat-like 431 753 IPR036322 GO:0005515
Bpe11g00483 756 MobiDBLite consensus disorder prediction 358 378 - -
Bpe11g00483 756 MobiDBLite consensus disorder prediction 1 21 - -
Bpe11g00483 756 MobiDBLite consensus disorder prediction 1 27 - -
Bpe11g00483 756 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 519 554 - -
Bpe11g00483 756 ProSiteProfiles Protein kinase domain profile. 1 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g00483 756 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 621 655 - -
Bpe11g00483 756 PANTHER PROTEIN SPA1-RELATED 2 1 755 IPR044630 GO:0009640
Bpe11g00483 756 Pfam WD domain, G-beta repeat 617 652 IPR001680 GO:0005515
Bpe11g00483 756 Pfam WD domain, G-beta repeat 516 552 IPR001680 GO:0005515
Bpe11g00483 756 PRINTS G protein beta WD-40 repeat signature 496 510 IPR020472 -
Bpe11g00483 756 PRINTS G protein beta WD-40 repeat signature 639 653 IPR020472 -
Bpe11g00483 756 PRINTS G protein beta WD-40 repeat signature 539 553 IPR020472 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00483 - - - qsu:111982906 924.465
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00483 Bpe-Chr11:3718950 Bpe11g00642 Bpe-Chr11:4947340 1.48E-136 dispersed
Bpe11g00483 Bpe-Chr11:3718950 Bpe08g01023 Bpe-Chr8:12483240 0 wgd
Bpe11g00483 Bpe-Chr11:3718950 Bpe09g00233 Bpe-Chr9:1684408 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g218 . . . Bda09g00507 . . . Bma13g00954 . . . Cma09g00865 . . . Cpe06g00688 Cpe02g00702 Bhi09g03428 Tan01g4394 . . . Mch11g1069 . Cla11g01762 Cam11g1829 Cec11g1849 Cco11g1856 Clacu11g1989 Cmu11g1798 Cre11g2206 . . . . . Csa04g02344 Chy07g00076 . . . . . Bpe11g00483 . . Bma14g00239 . . Cmo09g00854 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003437 3 3 1 2 3 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 3 2 4 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00483 Bpe_Chr11 FPKM 1.706596 1.476427 1.679028 1.647872 14.296684 13.912922 14.718163 34.601997 30.074192 30.007523