Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00488 ATGTTGGCCATTTTTCACAAAGCTTTCGCAAATCCACCTGAGGAGCTTTACAGCCCTGCATCTAAGAACCCTAAACTCCCGGCGGAAACTCTCCGAGAGTTTCTCTCTCGCCGCCCCCATAATTCATTCTCTCTAACTTTTGGAACCTCTGCTGTGCTCGCCTATGCCCACCCTGACCCGCCCTCTTCGCTTCATCAGAGATTATTCAGTGGGTTCGACGACATATACTGTCTCTTCAAGGGAACCCTGAACAATCTATCTCTACTCAACAAGCAGTACGGATTGTCAAAAGGAACAAACGCCGCCATTTTCATAACAGAAGCTTATAGAGCTCTTCGAGACAGAGGTCCGTACCCAGCCGATCAAGTTATAAAGGATCTCGACGGTAGCTTTGCCTTCGTCCTCTACGACACCAGAGCTGCAACTGTTTTTGCGGCACTGGGAGCTGACGGCGGCGTTAAGCTTTTCTGGGGCATTGCGGCAGATGGGTCTGTTGTCATTTCCGATGATCTGGAGGCCATTAAAGAGGGCTGTGCTAAATCGTTTGCTCCTTTCCCTACAGGTAATCAAATGGCCTTCCGGTTATGGTTAATGGTGATTAATCCATTAAATCATGTCTGCGCAGGGTGCATGTTTCACAGTGGAGGAGGATTGATGAGCTTTGAGCATCCAATGCATAAGATGAAGGCGATGCAGAGGGTTGACAGTGAAGGAGTCATATGTGGGGCCAGCTTCAAAGTTGATTCTTATACTAGAGTCAACAGCATTCCTAGAACTGGAAGTGAAGCTGACTGGACTCAATGGGACCCTCGCTAA 816 48.41 MLAIFHKAFANPPEELYSPASKNPKLPAETLREFLSRRPHNSFSLTFGTSAVLAYAHPDPPSSLHQRLFSGFDDIYCLFKGTLNNLSLLNKQYGLSKGTNAAIFITEAYRALRDRGPYPADQVIKDLDGSFAFVLYDTRAATVFAALGADGGVKLFWGIAADGSVVISDDLEAIKEGCAKSFAPFPTGNQMAFRLWLMVINPLNHVCAGCMFHSGGGLMSFEHPMHKMKAMQRVDSEGVICGASFKVDSYTRVNSIPRTGSEADWTQWDPR 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3768776 3769731 + Bpe003859.1 Bpe11g00488 110633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00488 271 Pfam Aluminium induced protein 2 189 IPR024286 -
Bpe11g00488 271 Pfam Aluminium induced protein 207 247 IPR024286 -
Bpe11g00488 271 PANTHER ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS 206 269 IPR044828 -
Bpe11g00488 271 PANTHER ALUMINUM INDUCED PROTEIN WITH YGL AND LRDR MOTIFS 1 189 IPR044828 -
Bpe11g00488 271 SMART DUF3700_2 2 247 IPR024286 -
Bpe11g00488 271 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 57 194 IPR029055 -
Bpe11g00488 271 PANTHER OS04G0679400 PROTEIN 1 189 - -
Bpe11g00488 271 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 31 195 IPR029055 -
Bpe11g00488 271 PANTHER OS04G0679400 PROTEIN 206 269 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00488 - - - jre:109013422 399.053
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe01g00417 Bpe11g00488 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g00066 Bpe-Chr8:367433 Bpe11g00488 Bpe-Chr11:3768776 1.24E-06 dispersed
Bpe13g00620 Bpe-Chr13:13176807 Bpe11g00488 Bpe-Chr11:3768776 4.19E-54 transposed
Bpe14g01212 Bpe-Chr14:9053270 Bpe11g00488 Bpe-Chr11:3768776 1.70E-81 transposed
Bpe14g01319 Bpe-Chr14:10182890 Bpe11g00488 Bpe-Chr11:3768776 6.33E-50 transposed
Bpe01g00417 Bpe-Chr1:2558310 Bpe11g00488 Bpe-Chr11:3768776 5.68E-105 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g258 Blo03g00646 . Bda07g00290 . . . . . . . Cma01g01199 Cma09g00879 Car01g01024 Car09g00791 Sed05g2577 Cpe06g00702 Cpe02g00710 Bhi09g03397 Tan01g4415 Cmetu07g1424 . Hepe01g1373 Mch11g1086 . Cla11g01776 Cam11g1840 Cec11g1861 Cco11g1871 Clacu11g2002 Cmu11g1811 Cre11g2219 Cone6ag0133 Cone9ag0158 . . Lsi04g01321 Csa04g02359 Chy07g00088 . . . . . Bpe11g00488 Bpe01g00417 . . . Cmo01g01253 Cmo09g00868 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003847 1 1 4 2 2 0 2 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 2 2 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00488 Bpe_Chr11 FPKM 29.657669 37.684978 69.851295 50.059368 11.500423 20.44145 8.542732 11.117551 11.317571 10.665971