Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00491 ATGAGCAAGACCGGAGACGAAGGCGAAGACGACGAGTGCTTCTACGAGTCTCTTGATCGCTTAGTCTCCTCCTCTTGTTCTTGCTCCACTTCTAATTCGGACTCCGACAACGATTCCAATTCTTATTCGCCGAATTATGGGTCGGAGCATGTTTTTTCAGTCCCCAAGTTCCCGGCGGGTGTGTCTAACTACGATCTTTGGGTCGCCGAGCCTTCTTCCGTTTCAGAGCGGCGTAATCGCCTTCTCCAGGAAATGGGCCTCAGCAAGGATCCCTCTTTGTCGCGGGTCAAATTTGTGTCTGAAGATAAAGAAAGCGATTCGATGGAGTTCACTCGTTTGGTGTTATCAGATCACTTGTCCCGTCAAGCTCAACGTAACGCTATCATCTTGTCAAAATCGGATGCTGCGTCAAACCATATCGTAAGCCAACACAATCGCCCTTATCATCACTTTGATAATAAGTTCAATTCTTCTTCTTCTTCTTCGGTTTATTCTCCTTCAATTCTTTCATCTCATTTAGTTGATGGGATTAGTTTGTCTGTAAATAATCGTAACCATTTAATTATGAAATCCCAAAGTGGCAAGGACGACGGAACTTCATCCGTCGGTAGTGCAACCTTGCTGAATAAACCGCCATTAGGAAAAGTTTGTAAAAGATTGGATGAAATTCGGAGTGATTCCGCTGTTTTAAATGCTAGTTCTGATCCCAATAGATTTCCATCGCACGGAAATGAGGGAAGTGGCGCAGAGGTTTCAGAGGATTTGGATTGTAATGGCACTGGTGAGGTTGATGACCAAGTCTGTACCATTAAGGATCTCGATAATGGAAAAGAATTTATTGTGAACGAGATTAGGGAAGATGGTATGTGGAATAAGCTCAAGGAAAATGTGGAGGAAGGCAATAAAGATAATGTCCACTCCTGTGTGAATGGCAGCAGTGGAGGCAGTTCGAAGTTGAAGAAGAAAGGGGGCTGGTTAAAGGGTATAAAGAGCGTGGCTAACACCATGACAGGGCAAAAAGAGAGGAGGAGCAGTGATGAGAGGGATACTTCATCTGAAAAGGGTGGGCGTAGATCAAGTTCTGCAACAGATGACAGTCAAGACATTTCATTTCATGGTCCAGAGAGAGTAAAAGTGCGGCAATATGGGAAGTCTAATAAAGAGCTCACAGCACTTTATAAGAGCCAGGAGATTCAGGCTCATAGTGGCTCTATATGGACCATTAAGTTCAGTTTGGACGGTAAATACCTTGCCAGTGCAGGTGAGGATCGGGTCATTCATGTTTGGCAAGTTTTGGAGTCAGAGAGAAAGGGGGAATTATTGGGAGAAAAATCAGAAGATGGGAACTTGAATTTTTTGTTCTTAGGCAATGATTCGCCTGAACCAACTTCATTGTTGCTGAATATAGACAATCATCTCGAGAAGAAGAGAAGGGGGAGGTCTTCTTTAAGCCGAAAATCAATGAGCTTTGAACATGTTGTAGTGCCGGAGACTATATTTGCTATTTCAGAGAAACCTATGTGCTCATTCCAAGGACATCTTGATGTGGTTCTTGACCTTTCCTGGTCCAAATCTCAGCGCAATAGAACAGATATTCTTGTCACTAATTGCTCAATTTGTCTTTTGTTTTACTCTCTCTCATTTTCTCTCTTTCTTTCACAGCATTTGCTCTCATCTTCTATGGACAAAACAGTGCGCCTGTGGAACTTGTCTAGCAAATCATGTTTGAAAATATTTTCACACAGTGACTACGTAACATGCATCCAGTTCAATCCTGTTGACGACAGATACTTCATCAGCGGATCTTTAGATGCCAAGGTTCGTATATGGAGTGTCCCAGATCGTCAAGTTGTTGATTGGAGTGATCTGCATGAGATGGTGACTTCTGCTTGCTATACTCCGGATGGCCAGGGTGCATTGGTTGGTTCTTACAAAGGAAGTTGTCGTTTATACAACACATCGGAGAACAAATTGCAGCCGAAATCTCATATCAATCTGCAGAACAAGAAGAAAAAATCTAGTCAGAAAAAGATCACTGGTTTTCAGTTTGCCCCAGGGAGCTCATCAGAAGTTCTCATAACATCTGCAGATTCACGAATCCGGGTTGTTGATGGTGTTGAGCTGGTGCACAAGTTCAAAGGTGAGCCTTATTTTTATAGAAATCTTTGGAAAAGTTTTCAGAATTTTGGAATGTCTGCTCAAGTTGGTTTTGTTGATGTTGCAGGATTTCGCAACACAAACCGCCAAATTTCAGCCTACCTTACCGCAAATGGTAAATACGTGGTTTCTGCTAGTGAGGATTCTCATGTCTATATATGGAAACACGAGGCCGAATCTCGACCAATCAGAAGCAAAAGCGTCACAGACACATACTCTTACGAATACTTTCACTGTCCAGATGTGACGGTTGCCGTGCCATGGCCCGGCATCACCGACACATGGGAATTTCATAACTCTTTAACTGGAGAGCAAAACGAATTTGATAACAATCTCGAAGATATCTCAACAGCCAATCATCCTCCGACACCAGTTGAGGACGTAAACGACCAAGACGGCTCATTTCCAGCCTCTGGCTTCACCAACAGTCCGCTTCACAGTACTATTTCAAGTGTCACCAACAGTTTCTTCTTTGATCGAATCTCAGCCACTTGGCCGGAGGAGAAACTCCAAAACTCTCGAAATCGGAGTAGTCCTCAAATTAGCAGTAACATCTCGAACGGAACAAATCAGAGCTCTTCTTCAGCTTGGGGTATGGTGATAGTTACGGCGGGTCTTCAAGGGGAACTAAGAACTTTCCAGAATTTTGGATTGCCGATTCGACTTTGA 2826 43.42 MSKTGDEGEDDECFYESLDRLVSSSCSCSTSNSDSDNDSNSYSPNYGSEHVFSVPKFPAGVSNYDLWVAEPSSVSERRNRLLQEMGLSKDPSLSRVKFVSEDKESDSMEFTRLVLSDHLSRQAQRNAIILSKSDAASNHIVSQHNRPYHHFDNKFNSSSSSSVYSPSILSSHLVDGISLSVNNRNHLIMKSQSGKDDGTSSVGSATLLNKPPLGKVCKRLDEIRSDSAVLNASSDPNRFPSHGNEGSGAEVSEDLDCNGTGEVDDQVCTIKDLDNGKEFIVNEIREDGMWNKLKENVEEGNKDNVHSCVNGSSGGSSKLKKKGGWLKGIKSVANTMTGQKERRSSDERDTSSEKGGRRSSSATDDSQDISFHGPERVKVRQYGKSNKELTALYKSQEIQAHSGSIWTIKFSLDGKYLASAGEDRVIHVWQVLESERKGELLGEKSEDGNLNFLFLGNDSPEPTSLLLNIDNHLEKKRRGRSSLSRKSMSFEHVVVPETIFAISEKPMCSFQGHLDVVLDLSWSKSQRNRTDILVTNCSICLLFYSLSFSLFLSQHLLSSSMDKTVRLWNLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSVPDRQVVDWSDLHEMVTSACYTPDGQGALVGSYKGSCRLYNTSENKLQPKSHINLQNKKKKSSQKKITGFQFAPGSSSEVLITSADSRIRVVDGVELVHKFKGEPYFYRNLWKSFQNFGMSAQVGFVDVAGFRNTNRQISAYLTANGKYVVSASEDSHVYIWKHEAESRPIRSKSVTDTYSYEYFHCPDVTVAVPWPGITDTWEFHNSLTGEQNEFDNNLEDISTANHPPTPVEDVNDQDGSFPASGFTNSPLHSTISSVTNSFFFDRISATWPEEKLQNSRNRSSPQISSNISNGTNQSSSSAWGMVIVTAGLQGELRTFQNFGLPIRL 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3780889 3786659 - Bpe003862.1 Bpe11g00491 110636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00491 941 MobiDBLite consensus disorder prediction 887 912 - -
Bpe11g00491 941 PRINTS G protein beta WD-40 repeat signature 598 612 IPR020472 -
Bpe11g00491 941 PRINTS G protein beta WD-40 repeat signature 417 431 IPR020472 -
Bpe11g00491 941 PRINTS G protein beta WD-40 repeat signature 556 570 IPR020472 -
Bpe11g00491 941 MobiDBLite consensus disorder prediction 303 317 - -
Bpe11g00491 941 MobiDBLite consensus disorder prediction 230 251 - -
Bpe11g00491 941 PANTHER WD REPEAT DOMAIN 44 741 941 IPR040324 -
Bpe11g00491 941 SMART WD40_4 668 704 IPR001680 GO:0005515
Bpe11g00491 941 SMART WD40_4 391 430 IPR001680 GO:0005515
Bpe11g00491 941 SMART WD40_4 503 569 IPR001680 GO:0005515
Bpe11g00491 941 SMART WD40_4 572 611 IPR001680 GO:0005515
Bpe11g00491 941 SMART WD40_4 614 652 IPR001680 GO:0005515
Bpe11g00491 941 SMART WD40_4 736 774 IPR001680 GO:0005515
Bpe11g00491 941 MobiDBLite consensus disorder prediction 302 377 - -
Bpe11g00491 941 Pfam WD domain, G-beta repeat 397 429 IPR001680 GO:0005515
Bpe11g00491 941 Pfam WD domain, G-beta repeat 505 569 IPR001680 GO:0005515
Bpe11g00491 941 Pfam WD domain, G-beta repeat 574 611 IPR001680 GO:0005515
Bpe11g00491 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 398 431 - -
Bpe11g00491 941 SUPERFAMILY WD40 repeat-like 390 774 IPR036322 GO:0005515
Bpe11g00491 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 556 578 IPR001680 GO:0005515
Bpe11g00491 941 Gene3D - 382 798 IPR015943 GO:0005515
Bpe11g00491 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 578 612 IPR001680 GO:0005515
Bpe11g00491 941 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 547 714 - -
Bpe11g00491 941 PANTHER WD REPEAT DOMAIN 44 6 295 IPR040324 -
Bpe11g00491 941 PANTHER WD REPEAT DOMAIN 44 295 527 IPR040324 -
Bpe11g00491 941 PANTHER WD REPEAT DOMAIN 44 547 714 IPR040324 -
Bpe11g00491 941 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 6 295 - -
Bpe11g00491 941 MobiDBLite consensus disorder prediction 835 859 - -
Bpe11g00491 941 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 578 612 - -
Bpe11g00491 941 ProSiteProfiles Trp-Asp (WD) repeats profile. 398 439 IPR001680 GO:0005515
Bpe11g00491 941 MobiDBLite consensus disorder prediction 340 361 - -
Bpe11g00491 941 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 295 527 - -
Bpe11g00491 941 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 741 941 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00491 K20241 WDR44, RAB11BP; WD repeat-containing protein 44 - csv:101208316 1118.99
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00848 Bpe-Chr2:6288455 Bpe11g00491 Bpe-Chr11:3780889 1.61E-167 dispersed
Bpe11g00491 Bpe-Chr11:3780889 Bpe12g00345 Bpe-Chr12:8523026 6.88E-117 dispersed
Bpe11g00491 Bpe-Chr11:3780889 Bpe15g00398 Bpe-Chr15:15503646 3.09E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g261 . . Bda07g00286 . . . . . . . Cma01g01196 Cma09g00880 Car01g01021 . Sed14g0480 Cpe06g00704 Cpe02g00713 Bhi09g03394 Tan01g4420 Cmetu08g0046 . Hepe01g1370 Mch11g1089 . Cla11g01778 Cam11g1842 Cec11g1863 Cco11g1873 Clacu11g2004 Cmu11g1813 Cre11g2221 Cone6ag0130 Cone9ag0154 Cone14ag1075 Cone15ag1068 Lsi04g01318 Csa04g02363 Chy07g00092 . . . . . Bpe11g00491 . . . . Cmo01g01250 Cmo09g00870 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006973 1 1 1 1 1 0 1 1 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 2 3 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00491 Bpe_Chr11 FPKM 2.595136 4.44795 5.395307 6.037953 1.532443 2.562353 2.016805 0.0 0.0 0.0