Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00507 ATGAGTGGAGTAAGCAAAGCTTGGATTGTGGCAGCAAGCATAGGAGCGGTGGAGGCTCTGAAAGATCAAGGCATTTGCAGATGGAATTACACTTTGAGGTCTCTGCAGCAGCATGCAAAGAACAATTTCGGATCATATGTTCAAGCCAAGAGGATTTCTTCTCATTCGTCTTCTGCTATTTCTAGCCGGATGAAGGAAGAGAAGCTAAAGAGATCTGAAGAATCACTTAGAAAAGTTATGTATTTGAGCTGTTGGGGTCCAAATTAA 267 42.32 MSGVSKAWIVAASIGAVEALKDQGICRWNYTLRSLQQHAKNNFGSYVQAKRISSHSSSAISSRMKEEKLKRSEESLRKVMYLSCWGPN 88
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3919749 3920015 - Bpe003876.1 Bpe11g00507 110652

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00507 88 PANTHER DUF3774 DOMAIN PROTEIN-RELATED 1 88 IPR022251 -
Bpe11g00507 88 PANTHER FAMILY PROTEIN, PUTATIVE-RELATED 1 88 - -
Bpe11g00507 88 Pfam Wound-induced protein 10 87 IPR022251 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00507 - - - qsu:111986378 135.191
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe08g01153 Bpe-Chr8:13329989 Bpe11g00507 Bpe-Chr11:3919749 6.02E-43 dispersed
Bpe11g00507 Bpe-Chr11:3919749 Bpe11g00508 Bpe-Chr11:3922626 2.57E-24 tandem
Bpe11g00507 Bpe-Chr11:3919749 Bpe14g00678 Bpe-Chr14:5370767 9.03E-08 wgd
Bpe11g00507 Bpe-Chr11:3919749 Bpe07g00568 Bpe-Chr7:12211800 2.82E-09 wgd
Bpe11g00507 Bpe-Chr11:3919749 Bpe08g01152 Bpe-Chr8:13326754 1.56E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g305 . . Bda07g00269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0109 Cone9ag0129 Cone14ag1094 Cone15ag1104 . . . . . . . . Bpe11g00507 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000404 6 4 5 4 3 4 4 2 4 4 3 4 4 5 4 6 4 10 3 2 3 5 5 1 3 5 5 2 4 3 121
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00507 Bpe_Chr11 FPKM 15.654632 20.8403 12.724762 11.505654 19.079666 22.050459 21.955618 13.897245 12.659567 13.10399