Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00519 ATGAAGGGCGAGTCGTTGGGGCTTATCGTAGGAATTTCGATAGGGGTTGTAATTGGATTTCTTGTGGCTGCTTTTGGTTTGTTTTGCTTCAAGTATCATAGAAAAAGGTCTCAAATAGGGAATAGTAGTTCCAGGAGAGCGACTACAATTCCTATTCGTACAAATGATGTTGATTCTTGTACTATTTTATCGGATTCGACGTTAGGTCCGAATGAATCGCCAAGAAAGTCTGCTTGGAATGGAAAATCCCTTTGGCTTGAAGGATTTAGACGAAGTAATGTTGTCTCAGCATCAGGAATTCTTGAGTATACTTATAAGGATCTGCAAAAGGCAACTGTTAATTTTACGACAGTGATAGGAAATGGTGCGTTCGGTCCTGTTTACAAAGCTCAAATGTCGACTGGTGAGACTGTAGCCGTTAAAGTTCTTGCATCGAATTCTAAGCAGGGAGAGAGAGAGTTTCAGGCCGAGGTTATGTTATTAGGAAGGTTGCATCATAGAAACCTTATGAATTTAATTGGATATTGTGCTGAAAAGGGCCAGCATATGCTTGTATATGTCTACATGAGTAATGGCAGCTTAGCTTCTCATTTATACAGTGAAAAAGTGGAAGTTTTAAGCTGGGATTTGCGGCTGCATATAGCTTTAGACGTAGCAAGAGGATTGGAATATCTCCACGACGGTGCCATTCCTCCGGTAATTCACCGCGATATCAAGTCTTCGAATATTCTCTTGGATCAATCCATGAGAGCGAGGGTTGCTGATTTCGGGTTATCGAGAGAAGAGATGGTGGACAAGAATGCAGCCAATATCAGGGGAACCTTCGGGTATCTTGACCCGGAATATATATCTACGAGAACGTTCACTAAGAAGAGTGATGTTTACAGCTTCGGGGTATCGCTTTTCGAGCTAATCGCTGGTCGAAATCCTCAGCAAGGCTTAATGGAATATGTGGAGCTTGCTGCTATGGATTCAGATGGAAAAGTTGGATGGGAGGAAATAGTGGATTTCCGACTAGAGGGGAATTTCAATTTGCAAGAGCTAAACGAGGTTGCGGCTCTTGCATACAAGTGCGTCAATCGAAACCCGAGAAAACGACCGATCATGCGCGACGTTGTTCAAGTGCTGTCACGGATTTTAAATTCAAGGCATAGTCGAAAGAATCACAAAAATTCCTTATCTGCAACAACAGATGAGGTCGTTCTCAATTTGGATCAATCGGACGGTAAGAGTCCGATTGCTAGACACGGTAGAGACGAATCTATGGATAGTGTACTGGAGAGTTGTGAAGTTTAG 1296 42.59 MKGESLGLIVGISIGVVIGFLVAAFGLFCFKYHRKRSQIGNSSSRRATTIPIRTNDVDSCTILSDSTLGPNESPRKSAWNGKSLWLEGFRRSNVVSASGILEYTYKDLQKATVNFTTVIGNGAFGPVYKAQMSTGETVAVKVLASNSKQGEREFQAEVMLLGRLHHRNLMNLIGYCAEKGQHMLVYVYMSNGSLASHLYSEKVEVLSWDLRLHIALDVARGLEYLHDGAIPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKNAANIRGTFGYLDPEYISTRTFTKKSDVYSFGVSLFELIAGRNPQQGLMEYVELAAMDSDGKVGWEEIVDFRLEGNFNLQELNEVAALAYKCVNRNPRKRPIMRDVVQVLSRILNSRHSRKNHKNSLSATTDEVVLNLDQSDGKSPIARHGRDESMDSVLESCEV 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4047241 4049954 + Bpe003887.1 Bpe11g00519 110664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00519 431 MobiDBLite consensus disorder prediction 407 431 - -
Bpe11g00519 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Bpe11g00519 431 Pfam Protein tyrosine and serine/threonine kinase 114 376 IPR001245 GO:0004672|GO:0006468
Bpe11g00519 431 MobiDBLite consensus disorder prediction 411 425 - -
Bpe11g00519 431 SMART serkin_6 113 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g00519 431 PANTHER OS01G0253100 PROTEIN 7 402 IPR045271 GO:0004714|GO:0006468
Bpe11g00519 431 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 7 402 - -
Bpe11g00519 431 Gene3D Transferase(Phosphotransferase) domain 1 189 403 - -
Bpe11g00519 431 ProSiteProfiles Protein kinase domain profile. 113 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe11g00519 431 CDD STKc_IRAK 119 379 - -
Bpe11g00519 431 SUPERFAMILY Protein kinase-like (PK-like) 96 376 IPR011009 -
Bpe11g00519 431 Gene3D Phosphorylase Kinase; domain 1 86 188 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00519 - - - qsu:112025008 687.182
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00519 Bpe-Chr11:4047241 Bpe11g01186 Bpe-Chr11:8821363 5.38E-88 dispersed
Bpe11g00519 Bpe-Chr11:4047241 Bpe11g00038 Bpe-Chr11:270115 1.55E-142 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g406 Blo03g00588 . Bda07g00333 . . . . . . . Cma01g01158 Cma09g00918 . Car09g00834 . Cpe06g00738 Cpe02g00744 Bhi09g01956 . . . . Mch11g1145 . . . . . . . . . Cone9ag0109 . . Lsi04g01252 . Chy04g01023 . . . . . Bpe11g00519 . . Bma14g00362 . Cmo01g01212 Cmo09g00912 Cma04g01014 . Car04g00865 Car16g00570 Cpe14g00713 Cpe01g00836 . . . . . . . Cla05g01548 . . . . . . . . . Cme04g00791
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001530 1 4 1 1 1 1 4 1 2 2 2 1 4 2 1 4 0 0 5 2 2 1 0 0 1 2 0 0 0 1 46
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63567 PF07714 PK_Tyr_Ser-Thr 1.00E-51 CL0016 Bpe PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00519 Bpe_Chr11 FPKM 10.147662 11.096957 21.297754 20.894724 10.096313 9.506763 10.072255 16.944912 15.546714 15.956009