Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00524 ATGGTTTCGCCAGAAACCACTGATTGGCTCTACGACTACGGAGTGATCGAAGATATCCCTGTCCATGATGGGAATTTCTCTGTTTCAAATTCTGGGTTTTCTTGGCCTGTGCAGGCCTTGAACGACTCATCTAATGTCAGGGTGCATAAATTTGCTAGTGAACATGTATCCTCTGCTACACGTGTTTTCAATGACAGGGTTAGATCTGAATCAAGTTCTGTATCCAGCTCCAAAGCATGCAGAGAGAAGCTGAGGAGAGACAGGCTGAATGACAAGTTTCTGGAATTGGGCTCTATTCTGGATCCCAGAAGACCCCCCAAAACAGACAAGGCTGCAATTTTAGTTGATGCTGTTCGAATGGCTGAGAAGAATGAACTCAGGGATGAAAAGCAGAGGCTGAAGGCAGAAAAAGAGACAATAGAGCATCAATTGAAGAACATGAATTCTCAGCCCAGCTTCCTGCCTCCAGCCACCGCAATCCCAGCCGCATTTGCTGCTCAAGGGCAAGCTCCTGGCAATAAGTTGGTGCCTTTCCTTACCTACCCCGGAGTGGCAATGTGGCAGTTCATGCCTCCTGCTGCAGTGGACACCTCGCAGGATCACGTTCTCCGCCCACCCGTTGCTTAA 627 48.64 MVSPETTDWLYDYGVIEDIPVHDGNFSVSNSGFSWPVQALNDSSNVRVHKFASEHVSSATRVFNDRVRSESSSVSSSKACREKLRRDRLNDKFLELGSILDPRRPPKTDKAAILVDAVRMAEKNELRDEKQRLKAEKETIEHQLKNMNSQPSFLPPATAIPAAFAAQGQAPGNKLVPFLTYPGVAMWQFMPPAAVDTSQDHVLRPPVA 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4073329 4076145 + Bpe003891.1 Bpe11g00524 110669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00524 208 PANTHER TRANSCRIPTION FACTOR ILR3 1 120 - -
Bpe11g00524 208 PANTHER TRANSCRIPTION FACTOR ILR3 121 208 - -
Bpe11g00524 208 Pfam Helix-loop-helix DNA-binding domain 77 119 IPR011598 GO:0046983
Bpe11g00524 208 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 124 IPR011598 GO:0046983
Bpe11g00524 208 PANTHER BHLH TRANSCRIPTION FACTOR 1 120 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bpe11g00524 208 PANTHER BHLH TRANSCRIPTION FACTOR 121 208 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Bpe11g00524 208 Gene3D - 76 154 IPR036638 GO:0046983
Bpe11g00524 208 CDD bHLH_AtILR3_like 78 145 - -
Bpe11g00524 208 SMART finulus 79 132 IPR011598 GO:0046983
Bpe11g00524 208 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 133 IPR036638 GO:0046983
Bpe11g00524 208 Coils Coil 119 150 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe09g00195 Bpe11g00524 CCT
Bpe08g01142 Bpe11g00524 CCT
Bpe09g00195 Bpe11g00524 ECH
Bpe08g01142 Bpe11g00524 ECH
Bpe03g00805 Bpe11g00524 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00524 Bpe-Chr11:4073329 Bpe13g00563 Bpe-Chr13:12826572 1.03E-19 dispersed
Bpe11g00524 Bpe-Chr11:4073329 Bpe14g00694 Bpe-Chr14:5450124 9.41E-45 wgd
Bpe11g00524 Bpe-Chr11:4073329 Bpe03g00805 Bpe-Chr3:27979792 4.68E-47 wgd
Bpe11g00524 Bpe-Chr11:4073329 Bpe08g01142 Bpe-Chr8:13277068 3.49E-99 wgd
Bpe11g00524 Bpe-Chr11:4073329 Bpe09g00195 Bpe-Chr9:1381713 2.18E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
22042 PF00010 HLH 1.80E-08 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00524 - - pvy:116128739 276.559