Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00525 ATGGTTATGATTGAAAGTGGGTTTGGTGAATTGGTGATTTTTGTGTTCTGGTTTGTGGGTATTTCGCTTTACTTCATTATGGGGATGACAAGTGATGCTGTTCAGAAACAGCAAGGAGGGCTGCATCGATCAGGTCGGGCTAATGGGGTCATCTCGAGCTCATTTCGTGCTTTCTCAAGCTACCTGAGAATTGTCTCCTCCGGTGCTTCGACTGTGGCAAGGTCTGCTGCGTCAGTGGCGTCATCAACTGTGGAGAAGGAATTTGACGCAAATTCTGATCAGGTAAATTGGGCTAGGTTTGACAAGTTAGAGATTGAAGGAGATGTTGCTCGGCGAGTCCTCCTCTTGGGTTATTGGTCTGGTTTCCAAGTTTGGGATGTCGAAGAAGCCAACAATGTCCGAAACTTAGCTTCCAGAAATGATGGTCCCGTCTCATTCATGCAAATGTTACCAATCCCATTAAAATCAAAAAGATTGAGTGATAAATTTGAAAATAGTCACCCGTTGCTTGTTCTTTGTACCAATGGGCCCATAAATGTTAATCCCAACCAGCACGATCAATCAGCCAGTCAAAGGAAAATGACGAATGGGAAGAAGTCTCAAGACGTATCAAATGTTCAATTTTATTCCTTAAAATCGCAATCTTATGTTCATGAGCTCAAGTTTCAGTTGATTGTTTATTCGATAAGGTGCAGTTCACGAGTTGTAGCCATTTCTCAAGCAACACAGATACACTGCTTCGTTGCCTCTACATTGGAGAGGGAATATTCAATTCTAACAAATCCAATAGTCATGGGGTGTCCTAGTTTTGAAGGTATAGGATATGGACCTCTTGCTATAGGGCCAAGATGGTTAGCTTATAGTGGAATTCCAGTTGCAGTAACCAATCCAGGCCGCGTCAGTCCTCAACATCTGACAATTTCTGCAAGCTTTCCTAGCATTGCTTCGAACGGAGTTGAACACTATGCGAAGGAATCAAGTAAGCAACTTGCTCAAGGGCTGGCAACCCTTGGAGACTTGGGATATAAGAAGTTCTCGAGATATTATTCAGAGCTTATCACAGACAGTAGTCATTCTCTGCAATCAAAGGGCAATGGAGCTCTTAATGGCCTTATGGCAGATGGAGATAATGTTGGAATGGTCATTGTACGGGATATAGTCAGCAAAGATGTCATCACCGAGTTCAGAGCGCACAAAAGTCCCATCTCGGCATTATGCTTTGATCCTAGTGGGACACTTTTAGTGACTGCATCTGTTCAAGGGCATAACATAAATGTTTTTGAAATCATGCCTGGATTAGCTAGAAGTTCCTCTGCATCCTGTGCTCATCTCTATCGACTGCAGCGTGGTTTGACTAATGCAGTCATACAAGATATTAATTTCAGCGAGGATAGGAACTGGATTATGATCAGTTCCTCCAGAGGGACAAGCCATCTTTTTGCTATAAACCCAGTTAGTGGATCAGTGAATTTACAGTCTAAAAATGGCGGTTTAAGTGTTCCGACAAAGCCACCAATTCAAAAGCTACAAAATTGCATCTCACAAATGCCTAACCAACAGAGCCTTTTTGCATCAAACCATCCATTGACACTTTCTGCTGTAAGTAGAATACATAACGGAAATGGCTGGAGAGGCACTGTTAGTGAGGCAGCTGCTGCTGCAGCAGGCAGAGTAAGTCCCCTGTCGGGGGCTATTGCTTCGTGTTTTCATCACTACGAGAATAATTCATTGCATGGCGATAATGGCTCGACAAAATCTAAGTATCACTTTCTGGTTTTTTCCCCATCTGGTAGTATGGTTCAATATGGATTAGGAATTAGCTTAGATCAGGCTGATGTTGGATCTGGTCTAAATGGTGCCTACAAATCGGCAACAAATGCGGATTCTAGGCTAGCAGTTGAGGCAATTCGGAAGTGGAATATATGTCAGAGACAAAATCAAAGAGAGCGAGAAGATAACATTGATATATATGGTGATACTGGTTATGATGGGTCGAACAGCAAGAAAATATGTACTAAGGAAACAATTGGAAGTTCGCATTTTTCAGAAGATAGCAGTTCAATCACAGAAGAAAAGCACCATTTGTATATTTCAGAAGCTGAATTGCAAATGCATCAAGCTCCAAGTGCGTTGTGGGCTAAACCTGAGATCTACTTCCAATCGATTATGAATGATAATCTTGGAGTGGGTGAAAAAAATCTTTTGAGTGGGGAAATAGAGATCGAAACGATACCAACACGCATGATCAAAGCACGGTCTAAAGATCTGGTTCCTGTCTTCGACTATCTTCCGTCTCCCAAACCAACACAAATCAGGTGTGCCTAG 2325 42.41 MVMIESGFGELVIFVFWFVGISLYFIMGMTSDAVQKQQGGLHRSGRANGVISSSFRAFSSYLRIVSSGASTVARSAASVASSTVEKEFDANSDQVNWARFDKLEIEGDVARRVLLLGYWSGFQVWDVEEANNVRNLASRNDGPVSFMQMLPIPLKSKRLSDKFENSHPLLVLCTNGPINVNPNQHDQSASQRKMTNGKKSQDVSNVQFYSLKSQSYVHELKFQLIVYSIRCSSRVVAISQATQIHCFVASTLEREYSILTNPIVMGCPSFEGIGYGPLAIGPRWLAYSGIPVAVTNPGRVSPQHLTISASFPSIASNGVEHYAKESSKQLAQGLATLGDLGYKKFSRYYSELITDSSHSLQSKGNGALNGLMADGDNVGMVIVRDIVSKDVITEFRAHKSPISALCFDPSGTLLVTASVQGHNINVFEIMPGLARSSSASCAHLYRLQRGLTNAVIQDINFSEDRNWIMISSSRGTSHLFAINPVSGSVNLQSKNGGLSVPTKPPIQKLQNCISQMPNQQSLFASNHPLTLSAVSRIHNGNGWRGTVSEAAAAAAGRVSPLSGAIASCFHHYENNSLHGDNGSTKSKYHFLVFSPSGSMVQYGLGISLDQADVGSGLNGAYKSATNADSRLAVEAIRKWNICQRQNQREREDNIDIYGDTGYDGSNSKKICTKETIGSSHFSEDSSSITEEKHHLYISEAELQMHQAPSALWAKPEIYFQSIMNDNLGVGEKNLLSGEIEIETIPTRMIKARSKDLVPVFDYLPSPKPTQIRCA 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4078001 4081293 - Bpe003892.1 Bpe11g00525 110670

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00525 774 Pfam Breast carcinoma amplified sequence 3 527 758 IPR022175 -
Bpe11g00525 774 SMART WD40_4 388 428 IPR001680 GO:0005515
Bpe11g00525 774 SMART WD40_4 438 481 IPR001680 GO:0005515
Bpe11g00525 774 PANTHER AUTOPHAGY-RELATED PROTEIN 18F 41 772 - -
Bpe11g00525 774 PANTHER BREAST CARCINOMA AMPLIFIED SEQUENCE 3 41 772 IPR045142 GO:0006914
Bpe11g00525 774 Gene3D - 44 526 IPR015943 GO:0005515
Bpe11g00525 774 SUPERFAMILY WD40 repeat-like 81 487 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00525 - - - qlo:115955563 903.279
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00525 Bpe-Chr11:4078001 Bpe08g01141 Bpe-Chr8:13272476 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g430 Blo03g00582 Blo03g01436 . . . . . . . . . Cma09g00926 . Car09g00841 . Cpe06g00745 . . . . . . . . . . . . . . . Cone6ag0088 Cone9ag0103 . . . . . . . . . . Bpe11g00525 . . . . . . . . . Car16g00563 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005697 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00525 Bpe_Chr11 FPKM 238.402893 261.510254 285.48288 277.554565 52.021477 55.548588 49.415791 280.056854 275.350067 260.629089