Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00529 GGCGGGGGCTCAAAGGTTTGGACTGTTCCTACTGACCCAAATGGACAAACCTTGAATCAATGGGCAGAATCAAACAGATTCCAAGTTGGAGACTCCTTAGCTTTCAGTTTTACAGTGCTTCAAGTTTCTCAGGATGACTACAGAACTTGCACAACTGAAGCTCCAATCAAGAACCTCTCCAATGGAGATTCTGTGTTTAAGCTTGAAAGATCAGGGGTTAGCACCTTGGTTTTAGCTGAACACGAAGGGGGTTCAATCAGTTCTGCATCTGTTTCTGCAATAGTTGCTGCTGATTCCTTCGGTAAGGACAATTCCATTTCAGTGCTGTTGGCTGGATCAGGTCCTTCGCTTCACGAAGCTGCTGACCAAGCTGCCTCACGCCTTTCACCGATTTCTCAGGTACTTGTGGCAGATTCAGACAAATTCGCATATTCTCTTGCAGAGCCGTGGGCTAAATTAGTCCAATTAGTTCAACAAAGAGGTGGCTTTTCTAACATAATTGCTGCTGCAAGTTCTTTTGGCAAAAACATTCTTCCACGTGCAGCTGCTCTTTTAGATGTTTCTCCGATCACCGAAGTGATTCAAATATCGGAATCACGTCTATTCGTGAGGCCAATATATGCAGGCAATGCACTTGCTACTGTTCGATACACTGGCTCTGATCCTTGTATGTTGACCATTAGATCTACATCTTTTCCTGTGGCCTCGACCTCTGCTGAATCAAAATCTAACAAGGCGTCTATTTCTCAGGTTGATCTTTCAGCCTTTGGTGACGACTCTATTGGCAAATCTAGATACGTGAAACACACATCTCAAGATAAAGAACGACCCGACCTCGGTACTGCTCGTGTTGTTGTAACAGGAGGGCGAGCTTTGAAAAGTGCGGAGAACTTCAAAATGATTGATAAGCTTGCAGGAAAACTTGGGGCAGCTGTTGGAGCTACTCGTGCTGCCGTTGATGCTGGTTTTGTTCCCAATGAGCTTCAGGTTGGACAAACTGGAAAGATTGTTGCACCAGAATTGTATATGGCTTTTGGTGTATCAGGTGCCATTCAACACTTGGCCGGGATGAGAGACTCTAAAGTCATTGTAGCTGTAAATAAAGATGCAGATGCACCAATATTCCAGGTTGCTGATTATGGGCTCGTCGGTGATCTCTTTGAGGTGATACCGGAGTTGTTAAAGAAGTTACCTGAGAGAAAATAA 1206 44.61 GGGSKVWTVPTDPNGQTLNQWAESNRFQVGDSLAFSFTVLQVSQDDYRTCTTEAPIKNLSNGDSVFKLERSGVSTLVLAEHEGGSISSASVSAIVAADSFGKDNSISVLLAGSGPSLHEAADQAASRLSPISQVLVADSDKFAYSLAEPWAKLVQLVQQRGGFSNIIAAASSFGKNILPRAAALLDVSPITEVIQISESRLFVRPIYAGNALATVRYTGSDPCMLTIRSTSFPVASTSAESKSNKASISQVDLSAFGDDSIGKSRYVKHTSQDKERPDLGTARVVVTGGRALKSAENFKMIDKLAGKLGAAVGATRAAVDAGFVPNELQVGQTGKIVAPELYMAFGVSGAIQHLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLKKLPERK 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4096833 4101076 + Bpe003896.1 Bpe11g00529 110674

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00529 401 PIRSF Electra_flavoP_a 72 401 IPR001308 GO:0009055|GO:0050660
Bpe11g00529 401 SUPERFAMILY Cupredoxins 2 73 IPR008972 -
Bpe11g00529 401 PANTHER ELECTRON TRANSFER FLAVOPROTEIN ALPHA 72 399 IPR001308 GO:0009055|GO:0050660
Bpe11g00529 401 Gene3D - 274 399 - -
Bpe11g00529 401 Pfam Plastocyanin-like domain 7 74 IPR003245 GO:0009055
Bpe11g00529 401 Pfam Electron transfer flavoprotein domain 75 254 IPR014730 -
Bpe11g00529 401 Pfam Electron transfer flavoprotein FAD-binding domain 278 358 IPR014731 -
Bpe11g00529 401 SMART ETF_2 75 260 IPR014730 -
Bpe11g00529 401 ProSitePatterns Electron transfer flavoprotein alpha-subunit signature. 341 367 IPR018206 -
Bpe11g00529 401 ProSiteProfiles Phytocyanin domain profile. 1 99 IPR003245 GO:0009055
Bpe11g00529 401 SUPERFAMILY DHS-like NAD/FAD-binding domain 277 397 IPR029035 -
Bpe11g00529 401 PANTHER ELECTRON TRANSFER FLAVOPROTEIN SUBUNIT ALPHA, MITOCHONDRIAL 72 399 - -
Bpe11g00529 401 CDD ETF_alpha 74 252 IPR033947 -
Bpe11g00529 401 Gene3D HUPs 79 273 IPR014729 -
Bpe11g00529 401 Gene3D - 5 78 IPR008972 -
Bpe11g00529 401 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 74 243 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00529 K03522 fixB, etfA; electron transfer flavoprotein alpha subunit - fve:101300128 504.982
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00529 Bpe-Chr11:4096833 Bpe02g01264 Bpe-Chr2:16085611 8.88E-17 dispersed
Bpe11g00529 Bpe-Chr11:4096833 Bpe11g00459 Bpe-Chr11:3570473 3.00E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g462 Blo03g00578 . Bda07g00344 . . . . . . . . Cma09g00935 . Car09g00848 Sed07g2661 Cpe06g00752 . Bhi09g01931 Tan01g4520 Cmetu04g0908 . Hepe01g1300 Mch11g1164 . . . . . . . . . Cone9ag0097 . . Lsi04g01229 . . . . . . . Bpe11g00529 . . Bma14g00352 . . Cmo09g00932 . . . . . . . . . . . . . Cla05g01520 Cam05g1633 . Cco05g1669 Clacu05g1622 Cmu05g1520 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009641 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00529 Bpe_Chr11 FPKM 14.146488 15.152788 18.6283 16.429501 12.240025 9.161801 10.717335 6.934621 6.770968 6.974279