Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00537 TTGCCTGGTGAAAATGTGGCGAAAATCAGAACAGATATGATGAAGGAACAGCTTGCAACTTTTCGCTCTCAGTTAGAGGAATTCGCTAGCAAACACAGGAAAGACATAAGTAAGAACCCTGCTTTTAGATCACAGTTCCATGAGATGTGCACAAAAGTTGGTGTTGATCCGTTAGCCTCAAGCAAGGGTTTCTGGGCAGAGCTTTTGGGGATTGGTGACTTCTACTTTGAACTACTGGTGATTTCAGCTGGGAAGAAAAAGCTAGTAGGGTCTCTTCCAACGGAGTCGAACAAAGATCACAATGAAATTCTAGAGCTGGCCCAGGTAAGAACAACTTATTTGGTTACGAAGGCAGTACACAAGATTTCTTTCTGTGATCCTTGGACTTCTCTTTAG 396 42.93 LPGENVAKIRTDMMKEQLATFRSQLEEFASKHRKDISKNPAFRSQFHEMCTKVGVDPLASSKGFWAELLGIGDFYFELLVISAGKKKLVGSLPTESNKDHNEILELAQVRTTYLVTKAVHKISFCDPWTSL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4137886 4139184 + Bpe003904.1 Bpe11g00537 110682

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00537 131 Gene3D - 3 64 - -
Bpe11g00537 131 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 3 80 IPR016689 GO:0000814|GO:0071985
Bpe11g00537 131 SUPERFAMILY Winged helix DNA-binding domain 3 80 IPR036390 -
Bpe11g00537 131 Pfam EAP30/Vps36 family 3 79 IPR040608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00537 K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22 - zju:107405837 155.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00537 Bpe-Chr11:4137886 Bpe08g01130 Bpe-Chr8:13213753 2.08E-49 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g485 . . . Bda09g00393 . . . . . . . . . . . . . . . . . . . . Cla10g00515 Cam10g0510 Cec10g0527 Cco10g0514 Clacu10g0531 Cmu10g1357 Cre10g0761 . . Cone14ag1137 Cone15ag1155 . . . Cme06g02263 . . . . Bpe11g00537 . Bma07g01304 . Sed13g1172 . . . . . . . . Bhi11g00631 Tan01g1694 Cmetu06g0852 . . Mch10g1257 . . . . . . . . . . Chy06g01807 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0035330 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00537 Bpe_Chr11 FPKM 6.947854 6.777081 7.09633 7.909476 6.357307 6.117561 6.234677 5.622784 5.617019 5.295552