Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00540 ACCATGGCGTCCTCTTCTTCTTTTTTGCTTTCCTGTGCCCTTGTTGTCCTGTCGATCCTGATTTCTCAAATCGCTCCTCAAACGACGGCATTTATGTGGCCTGTGCACCCTCGCGATGTCCTCCCTTTCTTGCCTAGACAACTTTCCTGGCCCATCCTTAACTCTCTCCATTCCGCTGTTGATCTTCTCCCCACTTTCGTCGGGACTGTGTCTTCTCATAACGACACTCCCCATTGGAAGGGTGCTTGTTTTTATAAAAATTCGGCTTGGATGGAGTTTCACAATAAAAGTGGCTCCGAATTTGGTGGTGGTACGCTGCATATCAAGGTTAGTAAAGCTCATAGTTGGACATGTATGGATCTTTATGTCTTTGCAACTCCATACCGAGTAACGTGGGACTACTACATTTTGTCACGGGAGCATACTCTTGAAATCAAGGCGTGGGAAGGGAAAGCAGAGTTTGATTATGTTAGAAACAAAGGCGTGTCCATTTTCCTCATGCAAGCAGGGATGCTGGGAACCCTTGAAGCACTCTGGGATGTCTTCCCTTTATTTACAAATACCGGATGGGGAGAGAAATCTAACATTGGATTTCTTGAGAAACATATGGGAGCAAATTTTGTTCAGCGTCCTCAACCATGGGTGGCAAATGTAAGTGCTGAGGATATTCAGTCTGGAGATTTCCTTGCCATATCAAAAATTCGTGGGCGATGGGGTGGTTTTGAGACTCTAGAGAAGTGGGTTAGTGGAGCATATGCCGGTCATTCAGCTGTTTGCTTAAGGGATTCTGAAGGAAAGTTGTGGGTGGGGGAATCTGGCCATGAAAATGAACAGGGAGATGATGTTATTGCTATGTTACCATGGGATGAATGGTGGGACTTTGAGTTAAACACAGATGATGCTAATCCTCATATATCGTTGCTTCCTCTACATCCTGCTTTGCGAGCCAAATTTAATGAGACTGCTGCTTGGGAGTATGCGCGCAGCATGGAGGGCAAACCTTATGGTTATCACAATCTATTATTCAGCTGGATAGACACCATAGATGGCAACTATCCACCCCCGTTAGATGCTCATCTGGTTGCTTCTGTAATGACTGTCTGGAATCAAATACAGCCAGCATACGCTGCAAATATGTGGAATGAAGCCTTAAACAAACGGCTAGGAACTGAGAGTCTAGGTCTTTCTGATATTCTGGTTGAAGTTGAAAAGCGTGGATCATCTTTTGATGAACTACTGGCAATTCCTGAACGGGATGACTGGATCTACACGGATGGGAAGTCAACATCCTGTGTCGCATTTGTCCTTGAAATGTATAAGGAAGCAGGGCTGTTTGGTCCAATTGCAAGCTCCATAGAAGTCACAGAGTTCACGATCAAAGATGCATACATGCTCAATTTTTTTGAAAATAATTCAAGCCGCCTGCCTGATTGGTGCACCGGTGGGGATGACGTGAAGCTTCCGTTTTGTCAGATTCGGGGTAAGTATCTAATGGAATTACCCGGGTACAATACAATGGAACCGTACCCACATATGAACGAAAGGTGCCCTTCTCTGCCTCCTCAATACTCCAGGCCACAGAATTGCTAG 1590 45.28 TMASSSSFLLSCALVVLSILISQIAPQTTAFMWPVHPRDVLPFLPRQLSWPILNSLHSAVDLLPTFVGTVSSHNDTPHWKGACFYKNSAWMEFHNKSGSEFGGGTLHIKVSKAHSWTCMDLYVFATPYRVTWDYYILSREHTLEIKAWEGKAEFDYVRNKGVSIFLMQAGMLGTLEALWDVFPLFTNTGWGEKSNIGFLEKHMGANFVQRPQPWVANVSAEDIQSGDFLAISKIRGRWGGFETLEKWVSGAYAGHSAVCLRDSEGKLWVGESGHENEQGDDVIAMLPWDEWWDFELNTDDANPHISLLPLHPALRAKFNETAAWEYARSMEGKPYGYHNLLFSWIDTIDGNYPPPLDAHLVASVMTVWNQIQPAYAANMWNEALNKRLGTESLGLSDILVEVEKRGSSFDELLAIPERDDWIYTDGKSTSCVAFVLEMYKEAGLFGPIASSIEVTEFTIKDAYMLNFFENNSSRLPDWCTGGDDVKLPFCQIRGKYLMELPGYNTMEPYPHMNERCPSLPPQYSRPQNC 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4152557 4156732 + Bpe003907.1 Bpe11g00540 110685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00540 529 PANTHER PLANT/F10M23-360 PROTEIN 21 529 - -
Bpe11g00540 529 PANTHER OS01G0793500 PROTEIN 21 529 - -
Bpe11g00540 529 Gene3D endopeptidase domain like (from Nostoc punctiforme) 217 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00540 - - - jre:108983926 931.398
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g01129 Bpe11g00540 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00822 Bpe-Chr10:14256105 Bpe11g00540 Bpe-Chr11:4152557 0 dispersed
Bpe11g00540 Bpe-Chr11:4152557 Bpe11g01739 Bpe-Chr11:13770922 0 dispersed
Bpe11g00540 Bpe-Chr11:4152557 Bpe08g01129 Bpe-Chr8:13209461 3.19E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g490 Blo03g00568 . Bda07g00353 . . Bpe08g01129 . . . . Cma01g01136 Cma09g00944 . Car09g00858 . Cpe06g00760 Cpe02g00765 . . . . . . . . . . . . . . . . . . Lsi04g01212 . . . . . . . Bpe11g00540 . . Bma14g00344 . Cmo01g01187 Cmo09g00942 . . . Car16g00547 . . . . . . . . . Cla05g01498 Cam05g1616 . Cco05g1644 Clacu05g1600 Cmu05g1497 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000656 4 3 3 2 4 4 4 3 3 3 2 3 5 3 3 6 3 5 4 3 3 3 2 2 4 3 1 4 2 3 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00540 Bpe_Chr11 FPKM 5.766607 6.507007 14.633536 15.879246 19.706072 19.892019 22.351822 60.893463 60.136837 59.323303