Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00543 ATGCACGATTTCTGCTTCACGATCCCGTATGGGTTGGTGCTGGTGGGAGGCGGGATTTTTGGATATTTCAGGAAAGGGAGCGTGGCATCATTGGGTGGCGGTGTGAGCGTTGGACTGCTGCTCATTCTGGCTGGATATCTGAGCCTCGAAGCTTTTAAGAAGAGGAAGAACTCATATCCTGCTCTGATTCTCGAGACAACAGTTTGTGCTGCCACACTCACATGGGTCATGGGACAACGCTATCTGCAAACCTCTAAGATTATGCCAGCCGGCATCATTGCTGGGATCAGTGCTCTCATGACTGTGTTTTACCTGTACAAGATTGCAAGCGGAGGAAACCACTTTCCTACCAAGGCGGAGTAA 363 50.14 MHDFCFTIPYGLVLVGGGIFGYFRKGSVASLGGGVSVGLLLILAGYLSLEAFKKRKNSYPALILETTVCAATLTWVMGQRYLQTSKIMPAGIIAGISALMTVFYLYKIASGGNHFPTKAE 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4167332 4174651 - Bpe003910.1 Bpe11g00543 110688

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00543 120 Gene3D - 1 112 IPR044890 -
Bpe11g00543 120 Pfam Transmembrane proteins 14C 6 104 IPR005349 GO:0016020
Bpe11g00543 120 PANTHER TRANSMEMBRANE PROTEIN 14, 15 1 120 IPR005349 GO:0016020
Bpe11g00543 120 PANTHER PROTEIN FATTY ACID EXPORT 5-LIKE 1 120 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00543 - - - jre:108993653 202.986
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe08g01127 Bpe11g00543 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00660 Bpe-Chr2:4359690 Bpe11g00543 Bpe-Chr11:4167332 3.43E-19 transposed
Bpe11g00543 Bpe-Chr11:4167332 Bpe08g01127 Bpe-Chr8:13199886 3.12E-55 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g495 . . Bda07g00358 Bda09g00397 . Bpe08g01127 . . . . Cma01g01135 . . . . . Cpe02g00766 . . . . . . . . . . . . . . . . . . Lsi04g01207 . . . Blo07g00910 . Bda05g00726 . Bpe11g00543 . Bma07g01301 Bma14g00343 . Cmo01g01186 . . . . Car16g00546 . . . . . . . . . Cla05g01494 Cam05g1610 . Cco05g1639 Clacu05g1590 Cmu05g1493 . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005657 3 1 2 2 2 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00543 Bpe_Chr11 FPKM 0.0 0.0 1.476908 1.358042 0.706255 1.234414 2.165741 0.0 0.0 0.0