Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00546 ACCATGATGCCTCACATGTCGCAGATGGCGTCGAATCAGATGCCCCAGCAGTATCTGCAGCAGCCGATGCCTCCCCAGCAGCAGTGGATGATGATGCCACCGCAGCAGCAGCACGCGCCGTCGCATCCGATGCCTCCGCCTGTTGGATGGACTCCGCAGCCGGTACCTCCCCCTATCTCTGTTCCCGCGCAGCAGTTTCCCCCAGCTACAGGATCCGGTGAGGTTCGTTCCCTTTGGATCGGGGATTTGCAGCAGTGGATGGACGAGAACTATCTCGTCTCCTGTTTCGGTCAGACTGGTGAGGTTATAACTGCTAAGGTTATTCGCAATAAGCTTTCTGGAATGCCTGAAGGTTATGGGTTTGTTGAGTTTGGAAGCAGGGCTGCTGCAGAGAGGACTTTACAAACGTTCAATGGTACATTGATGCCAAATTCTGACCAGAATTTTCGACTCAATTGGGCTACTCTAAGTGCTGGTGAAAGACGCCAAGACGATGGGCTTGATTATACAATTTTTGTTGGAGATTTGGCCGCTGATGTCACTGATTATACCCTTCAAGAAACATTTAAAGCAGTGTATCACTCAGTGAAGGGGGCAAAAGTTGTCACTGATCGAACCACTGGGCGATCCAAGGGTTATGGGTTTGTGAGGTTTGGTGATGAGAATGAACAGCTACGTGCCATGACTGAAATGAATGGTATGTACTGTTCTACTAGGCCCATGCGAGTTGGCCCTGCTGCATCAAAGAAATCTATTGGCGATGTTGGACAACCTCAGAAAGTTACCTACGAGAATACTCAAGGACATCCAGGGGAGAATGATCCAAATAATACAACAATATTTGTTGGAGGCTTGGATACAAGCGTTACTGACGAGCTATTGAGACAAGTATTTTCCCAATTTGGTGAGCTTGTTCATGTGAAAATTCCTGCTGGAAAGCGCTGTGGTTTTGTTCAGTTTGTTAACAGAACTTGTGCAGAGCAAGCTATATCCATGCTGAATGGAACTCAATTAGGTGGTCAAAATATTCGGCTTTCCTGGGGGCGGAGTCCAACTAATAAACAGGGTCAGCCAGATCAGGCTCAATGGAATAGCGGATACTTTGGGCATGCACAAGGATATAACACATATGGATATGTTCCAAATCCCCAAGATCCTAACATGTATTACGGAGGGTACCCTGGATATGGAAATTACCAGCAGCCTGGTGCATACCAGCAGCCACAGCAGGTAAAATCTTTTTTTCACCATTATAAGTTACTACAAATAAATATACTATTTGATACATGGTAA 1293 46.64 TMMPHMSQMASNQMPQQYLQQPMPPQQQWMMMPPQQQHAPSHPMPPPVGWTPQPVPPPISVPAQQFPPATGSGEVRSLWIGDLQQWMDENYLVSCFGQTGEVITAKVIRNKLSGMPEGYGFVEFGSRAAAERTLQTFNGTLMPNSDQNFRLNWATLSAGERRQDDGLDYTIFVGDLAADVTDYTLQETFKAVYHSVKGAKVVTDRTTGRSKGYGFVRFGDENEQLRAMTEMNGMYCSTRPMRVGPAASKKSIGDVGQPQKVTYENTQGHPGENDPNNTTIFVGGLDTSVTDELLRQVFSQFGELVHVKIPAGKRCGFVQFVNRTCAEQAISMLNGTQLGGQNIRLSWGRSPTNKQGQPDQAQWNSGYFGHAQGYNTYGYVPNPQDPNMYYGGYPGYGNYQQPGAYQQPQQVKSFFHHYKLLQINILFDTW 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4185893 4189553 + Bpe003913.1 Bpe11g00546 110691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00546 430 Gene3D - 255 359 IPR012677 -
Bpe11g00546 430 CDD RRM3_NGR1_NAM8_like 277 348 - -
Bpe11g00546 430 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 22 408 - -
Bpe11g00546 430 SUPERFAMILY RNA-binding domain, RBD 39 157 IPR035979 GO:0003676
Bpe11g00546 430 CDD RRM2_SECp43_like 168 247 - -
Bpe11g00546 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 156 IPR000504 GO:0003723
Bpe11g00546 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 144 IPR000504 GO:0003723
Bpe11g00546 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 344 IPR000504 GO:0003723
Bpe11g00546 430 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 171 239 IPR000504 GO:0003723
Bpe11g00546 430 Gene3D - 75 155 IPR012677 -
Bpe11g00546 430 SMART rrm1_1 279 346 IPR000504 GO:0003723
Bpe11g00546 430 SMART rrm1_1 77 152 IPR000504 GO:0003723
Bpe11g00546 430 SMART rrm1_1 170 244 IPR000504 GO:0003723
Bpe11g00546 430 CDD RRM1_SECp43_like 77 155 - -
Bpe11g00546 430 Gene3D - 168 244 IPR012677 -
Bpe11g00546 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 350 IPR000504 GO:0003723
Bpe11g00546 430 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 22 408 - -
Bpe11g00546 430 SUPERFAMILY RNA-binding domain, RBD 168 253 IPR035979 GO:0003676
Bpe11g00546 430 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 248 IPR000504 GO:0003723
Bpe11g00546 430 SUPERFAMILY RNA-binding domain, RBD 266 377 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00546 - - - zju:107431965 550.821
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00192 Bpe-Chr4:1262758 Bpe11g00546 Bpe-Chr11:4185893 7.71E-116 dispersed
Bpe06g00809 Bpe-Chr6:18256274 Bpe11g00546 Bpe-Chr11:4185893 1.79E-36 dispersed
Bpe10g00710 Bpe-Chr10:13501555 Bpe11g00546 Bpe-Chr11:4185893 4.59E-34 dispersed
Bpe11g00546 Bpe-Chr11:4185893 Bpe12g00052 Bpe-Chr12:406231 9.10E-12 dispersed
Bpe01g00315 Bpe-Chr1:1957857 Bpe11g00546 Bpe-Chr11:4185893 1.48E-08 transposed
Bpe11g00546 Bpe-Chr11:4185893 Bpe03g00795 Bpe-Chr3:27908511 2.07E-180 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g502 . . Bda07g00359 . . . . Bma13g01053 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe11g00546 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00546 Bpe_Chr11 FPKM 11.368374 13.975822 5.132023 4.139715 2.741573 1.498619 1.991876 16.014963 16.710028 17.354229