Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00557 CTGAGTTTTTTGAACATGAATTCATCACAAGCGCTCCTACTAATCCTAGCCCACTTCTCCATCCTTTTGACCGCAAAAGCCCGCCTCCTAAGCTGCTCAAAATCATTCGCTGATTCAGTCAAACTGAAAAACTGCAAAAAGCTTCCTACACTCGACGCAGAACTGGCATGGAGATACCAAAACGACGACCTCCACAACGGCATCCTCCTAAGCATAGTATTCGGAGCAAAGCTGGAGTCAGACCAAGGGTGGGTAGCCTGCGGAGTAAACCCAAAACAAGAACCTCAAATGGTGGGGACGAGAGCCATTATAGGCCTAAAACATCTGAACGGCTCGCTCACACACAATACCTATAACATAACGCTGTATACAAAAAAGGGTTGTCATTTATTGCCTACGAAGATCAATGAGGTTCAGGAAATGGACTTTCGCTACGTCGTAGCTACGGGCTACCACACCCTGAGTGCCAAGCTGAATCTGCCGATAGGGATGTACGACAAGTCGAAGTTGAACATTATCTGGCAGATAGGGCATCGGGTTGAAGGAGCAGAGCCGAAAATACACCCTGTGACTCTCCAACATGTCGACAGCATTGAAACTCTTAACTTGGATACCGGGACAACTCACACCATCGGCCATTACAGAACTCAACTTAGAGCAGTGCATGCGGCTTTGAACATCGTAGGTTGGGGAACTTTTATGCCAGCGGGGGCCATCATAGCAAGACATTTTAAGAAAGCACAAGGAAAATCTAGGATGTGGTTTTATCTTCACTTCTCTTGCCACATAGTGGGTTACACCATTGGCTTTGCCGGCTGGATCATCGGTTTGTACCTAGGCCGTGCTTCTAAATACTACAATTTTCAACTTCACAACATCCTTGCTGCTTTCATTCTCACCTTTGCTACCTTACAAATGATCAGTTTCATCTTTGACCCAGTCAAAATTACAAAACATCATAGGAACTGGAGCATATATCATCATGCTCAAGGATACAGTCTGCTGGTGGTGATCGGAGTTAACATATTTCAAGGAATTCACATTCTGAAGCCAGACAACTACTTGTGGAAGTTCCTTTGGGTAGGAATTCTTGTGGTTCTCGGTGTCGTCACACTCTTCTTGGAGGCTTACGCTTGGATTCATTTTTTGTGCGACCGTCTTTTTCCGGACAAGAACATCAGAAAATCGGCTTGGGTATGTTGTCGGTGA 1209 45.49 LSFLNMNSSQALLLILAHFSILLTAKARLLSCSKSFADSVKLKNCKKLPTLDAELAWRYQNDDLHNGILLSIVFGAKLESDQGWVACGVNPKQEPQMVGTRAIIGLKHLNGSLTHNTYNITLYTKKGCHLLPTKINEVQEMDFRYVVATGYHTLSAKLNLPIGMYDKSKLNIIWQIGHRVEGAEPKIHPVTLQHVDSIETLNLDTGTTHTIGHYRTQLRAVHAALNIVGWGTFMPAGAIIARHFKKAQGKSRMWFYLHFSCHIVGYTIGFAGWIIGLYLGRASKYYNFQLHNILAAFILTFATLQMISFIFDPVKITKHHRNWSIYHHAQGYSLLVVIGVNIFQGIHILKPDNYLWKFLWVGILVVLGVVTLFLEAYAWIHFLCDRLFPDKNIRKSAWVCCR 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4280979 4285407 + Bpe003924.1 Bpe11g00557 110702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00557 402 ProSiteProfiles Cytochrome b561 domain profile. 184 383 IPR006593 -
Bpe11g00557 402 SMART 561_7 221 346 IPR006593 -
Bpe11g00557 402 PIRSF UCP037471 4 397 IPR017214 -
Bpe11g00557 402 Pfam Protein of unknown function (DUF568) 97 203 IPR045265 -
Bpe11g00557 402 Gene3D - 202 379 - -
Bpe11g00557 402 CDD Cyt_b561_FRRS1_like 200 358 - -
Bpe11g00557 402 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 7 386 - -
Bpe11g00557 402 ProSiteProfiles DOMON domain profile. 51 177 IPR005018 -
Bpe11g00557 402 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 7 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00557 - - - qlo:115958170 358.221
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe09g00163 Bpe11g00557 CCT
Bpe09g00163 Bpe11g00557 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe10g00475 Bpe-Chr10:12024784 Bpe11g00557 Bpe-Chr11:4280979 2.01E-51 dispersed
Bpe10g00476 Bpe-Chr10:12029013 Bpe11g00557 Bpe-Chr11:4280979 7.12E-15 dispersed
Bpe11g00557 Bpe-Chr11:4280979 Bpe15g00746 Bpe-Chr15:17887126 7.92E-42 dispersed
Bpe11g00557 Bpe-Chr11:4280979 Bpe09g00163 Bpe-Chr9:1092712 3.06E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g546 . . Bda07g00372 . Bpe09g00163 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0052 Cone9ag0062 . . . . . . . Blo10g00842 . . Bpe11g00557 . . Bma14g00329 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011685 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00557 Bpe_Chr11 FPKM 5.711003 5.11718 6.428633 6.133859 2.351949 2.25345 2.616406 7.283296 7.58563 7.685397