Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00561 ATGGCTTCTTCTGATGATGAAGCTGAGGCTCTACCAGTATCTGTTTCAAATTATGACTTTGCAGATTATAAGGACGAACCAGTGTCATTCTCTGTTTTGCCAATTCTATGGGATGAGAGAGAGAGAGCAGACGAGAGGCAGGAAAAAATATTCCTACGTGGAACTACTGATAATGGACTGCAAAAAGTATTTAAGCAAGTCATAGGATGGAGATTCGATCTTTGTAATGCGAATCCTGAGGTTTTTGTGCTCTCTAAGGAGAACACATGGATAAAGCTTCAGAAGCCAAGGAAAAGCTTTGAGGACATCATCAGGACTACACTAATCACTGTTAACTGTCTTCATTTTTTGAAGAAAAACCCTGAAACGATTGGCAAGCCTTTGTGGGATCATTTGTCTAAAGTCTTCAGTACATATGAAGTTAGACCTTCTGCAAATGATCTGATGGACCAGATGTCTTTGATTAACGAAACCGTTGAGAGAGATGAGGACTTGGCAAACACTAAGTTTTTACTCATATTGTTGGAGGGAAAATCAAGCAAGTGGAAACTAGCTGATGAGGATATGAATGCTGCCTTAAACACTAGTTTCATAGTTGACGATTCAGATGAAGATATTGGTGATGGTGCAGAAGAAGATGAAAGTGATGATGATGTGTTTGATTCTGTTTGCGCCTTCTGTGATAATGGTGGTGATATTTTATGCTGTGAGGGGAGGTGCTTGAGGTCCTTTCATGCAACTGAAGAATCTGGAGAAGAATCTCTATGTGCATCTCTGGGATTTTCTCCCGAGGAAGTAGAAAGAATAGAGAACTTCTTTTGTAAGAATTGCCTATCTAAACAGCACCAATGCTTTGGTTGTGGAAAATTGGGTTCCTCTGACAAATCTTCTGGTGCAGAGGTCTTTCCTTGCGTGAATGCAACCTGCGGCTACTTTTATCATCCTCGTTGTATTGCAAAACTGCTTCACCGGGACAGTAAAGTTGCGGCAGAAGCGCTTGAGAAAAATATTGCAGCTGGTGAATCTTTCACTTGTCCTATTCACAAATGCTGTGTTTGTAAACAAGGGGAGAATAAGAGAGTTTATGAGTTGCAGTTTGCTGTCTGCAGGCGCTGTCCCAAGGCATACCACAGAAAATGCTTACCTTGTATGTTTTTCAGGGAGATTGCCCTGGACGATCCAGATGAAAAAGGAATAACGATCAGGGCTTGGGAGGATCTATTACCCAATCGGATATTAATATATTGCTTAAACCATGAAATGCTTCCTAAACCGGTTGGAACTCCTGTAAGAGACCATATTAAATTTCCTGGTCTTGAAGGAAAGAACTATGTTATTAGGAGGAAAGCTTCTTTGGATGGAAAGAAATTAAGGACATCAGATAGTATTGGAGATAGAAAAAAAGTTGTCGAGAAAAATACATATATTTCTTACGATGACATTTTCGAAGAAAAAACTACTGTCAGAAAAATTGCTGCAAAAGGGCCTAAATTAAATGAAAACTCATACTCTGCTGCGAAAGTGGCTCCAGACAAACCTAAAGAAAAACTTCTTCAAGCCTCAGATTCCTTCAGAAGAATTAAAGGGAGCACAACTTTCAAAAGATCTTTCAAAGACAACATGAAATCTGCCTCCGCAGAGCTTGATAAATCATCAATAAATAAGAACAAACCCTCTCTGGGTTACAGATTGTATTCCTTGATGACGAAGAGGCATGATCAAGTTAAGCCGAGGAAGCAGGATGTATCTTATCCTGAGCTTGGTATGTCTGCATCAGCGAAGTCTCTGTCAATGAAGTTGAGCAGCGACTTGCTTTCCTTAGATGAGGATGCAGAGAGAAGAATATTGGATTTGATGGAAGATGCTGCATCGTCAGTTTCCTGGAATGATATTGTTGAAAAGCATAAAGTTCCTTCTACTCATGCTTATTCTTCAAAAAATGTTGTGGAGAGGACCATCACCATGGGAAAGTTGGAAGGCTCAGTGGATGGTATTCGAGCAGCACTGCAGAAGCTAGAAGATGGATGTAGCATCGAGGATGCAGAAGCTGTATGTGAGCCTGTGGTTCTTACCCAATTTTTTAAATGGAAGAACAAGCTTAAAGTGTATCTTTCGCCTTTTCTTCATGGTATGCGCTACACATCATTTGGCCGGCATTTCACCAAAGTGGAGAAACTTCAAGAGATTGTTGATAAGCTCCACTGGTATGTTCAAAGCGATGACATGGTAGTGGACTTTTGTTGTGGTGCTAATGATTTCAGTATTCTAATGAAGAAAAAGCTTGAAGATACAGGGAAAAAGTGCTTCTATAAGAACTACGATTTTATCCCACCGAAGAATGATTTTAATTTTGAAAAGAGGGATTGGATGACTGTTGAGCCAAATGAGTTGCCTGCAGGGTCAAAGTTGATCATGGGACTAAATCCTCCATTTGGAGTTAAAGCTGCTCTCGCTAACAAATTTGTTGACAAGGCTCTTGAGTTTAATCCGAAGCTAATTATTCTCATTGTTCCGCCAGAAACAGAGAGGTTAGATAAAAAAGTATCACCTTACGACCTGGTATGGGAAGATGCTCATTTCTTGTCAGGAAAGTCCTTTTATCTTCCTGGATCTGTTGATGCAAACGACAAACAAATGGATCAGTGGAATATTAGGCCACCTCTTCTGTATCTTTGGAGCCGTCATGATTGGGCTGCTAAGCACAAAGTCATTGCTCAAAAGTATGGTCACCTGCAGGAAGAAGAGTTAGAAAAGCATACTGAAACTTCTGTTATTCAGAATCCTGCTGAAAGTCCTGGACTTGTTAATGATAAGCTTTACTTGAGTGATGATCCCTTACAAGCCAGACCAGAAGATTTCAGAGATGAGGTAATTGCCACTGAAACTCATAAAGGAGTCTCTTCTCAGTGTTTCGGTGACAGAGAAAGCCCTGAGACTTGTAGGCAGCACAATGTTGGGGTTGGTGAGAAATCCAGGAAGAGAAGGCGTGGTGAAGGAAAAGTTGGACAAAGGATGGATGATCTATTAGACGATGATAAACAAAATTCTAGGAGGCCTCCTGCAGATGCCAAATGTGAAGAAATGCCCATTTTTTCTCCAAATGCTGTGGAAAGCAGATCTTCAATGGAAGGTGTGGCATCCAAATCCATGGAGATGCCCCAGCAGCACAATCCTCAGCATTTGAACAATCCTCCATTGCCGGAGAGCCATATGTATGGCTCAAACCTACAATTTAGCACTTCTTATGGTGGACTTCATACAACAATAAATGATGAGTTTGACCGAAGATATGGTGAGGATCCTTACTTGATCGATCCAATATATGGATTACCAGGCATAGAAAGTCCAGGTTCATATTATGGAGCCAGAACTTTTGATGAACCTTTTATGGGGCGCATAAGAGGCGTGGAAGAAGTCCCTGGTTACAGAGCAAATGTTGGTGAGGCCGAAGACAGATACAGAAAAGATATACGCTCACAGATTCGTCTTTATGGTCAACAAAATCCTGATCCCTTAAGAACTAACTATCTAGAAGGGCAAGATCCAGGATATGACCAGATGGGATCATTGCCCCCAACTTATGGACAAATGGGTTCGGAAGCATCATCTTACAGAAGCGGTTCAGCCATGCAGCGATATGCTCCTAGATTGGATGAGCTAAATCACACTAGAATGGGCTCTTTTGGCTTGGCCTCACAAATGAGCAGAGATGGTATATCTGATTACAGACATCCCCCACCTTCGTATCGAGGTGGTGTTCCACCCTTCCCTTCTGGGCCCCCTCCACGACCGTTCTATCCGTATCATAATTCACCAGGTTGGCTCAATGAGTAG 3834 41.47 MASSDDEAEALPVSVSNYDFADYKDEPVSFSVLPILWDERERADERQEKIFLRGTTDNGLQKVFKQVIGWRFDLCNANPEVFVLSKENTWIKLQKPRKSFEDIIRTTLITVNCLHFLKKNPETIGKPLWDHLSKVFSTYEVRPSANDLMDQMSLINETVERDEDLANTKFLLILLEGKSSKWKLADEDMNAALNTSFIVDDSDEDIGDGAEEDESDDDVFDSVCAFCDNGGDILCCEGRCLRSFHATEESGEESLCASLGFSPEEVERIENFFCKNCLSKQHQCFGCGKLGSSDKSSGAEVFPCVNATCGYFYHPRCIAKLLHRDSKVAAEALEKNIAAGESFTCPIHKCCVCKQGENKRVYELQFAVCRRCPKAYHRKCLPCMFFREIALDDPDEKGITIRAWEDLLPNRILIYCLNHEMLPKPVGTPVRDHIKFPGLEGKNYVIRRKASLDGKKLRTSDSIGDRKKVVEKNTYISYDDIFEEKTTVRKIAAKGPKLNENSYSAAKVAPDKPKEKLLQASDSFRRIKGSTTFKRSFKDNMKSASAELDKSSINKNKPSLGYRLYSLMTKRHDQVKPRKQDVSYPELGMSASAKSLSMKLSSDLLSLDEDAERRILDLMEDAASSVSWNDIVEKHKVPSTHAYSSKNVVERTITMGKLEGSVDGIRAALQKLEDGCSIEDAEAVCEPVVLTQFFKWKNKLKVYLSPFLHGMRYTSFGRHFTKVEKLQEIVDKLHWYVQSDDMVVDFCCGANDFSILMKKKLEDTGKKCFYKNYDFIPPKNDFNFEKRDWMTVEPNELPAGSKLIMGLNPPFGVKAALANKFVDKALEFNPKLIILIVPPETERLDKKVSPYDLVWEDAHFLSGKSFYLPGSVDANDKQMDQWNIRPPLLYLWSRHDWAAKHKVIAQKYGHLQEEELEKHTETSVIQNPAESPGLVNDKLYLSDDPLQARPEDFRDEVIATETHKGVSSQCFGDRESPETCRQHNVGVGEKSRKRRRGEGKVGQRMDDLLDDDKQNSRRPPADAKCEEMPIFSPNAVESRSSMEGVASKSMEMPQQHNPQHLNNPPLPESHMYGSNLQFSTSYGGLHTTINDEFDRRYGEDPYLIDPIYGLPGIESPGSYYGARTFDEPFMGRIRGVEEVPGYRANVGEAEDRYRKDIRSQIRLYGQQNPDPLRTNYLEGQDPGYDQMGSLPPTYGQMGSEASSYRSGSAMQRYAPRLDELNHTRMGSFGLASQMSRDGISDYRHPPPSYRGGVPPFPSGPPPRPFYPYHNSPGWLNE 1277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4304535 4322430 - Bpe003928.1 Bpe11g00561 110706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00561 1277 MobiDBLite consensus disorder prediction 1234 1277 - -
Bpe11g00561 1277 SMART PHD_3 283 349 IPR001965 -
Bpe11g00561 1277 SMART PHD_3 350 420 IPR001965 -
Bpe11g00561 1277 SMART PHD_3 223 278 IPR001965 -
Bpe11g00561 1277 MobiDBLite consensus disorder prediction 1248 1268 - -
Bpe11g00561 1277 Pfam Cytosine specific DNA methyltransferase replication foci domain 17 136 IPR022702 -
Bpe11g00561 1277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 281 371 IPR013083 -
Bpe11g00561 1277 MobiDBLite consensus disorder prediction 919 938 - -
Bpe11g00561 1277 CDD PHD2_NSD 283 348 - -
Bpe11g00561 1277 PANTHER ENHANCED DOWNY MILDEW PROTEIN 1 1254 - -
Bpe11g00561 1277 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 1 1254 - -
Bpe11g00561 1277 MobiDBLite consensus disorder prediction 976 1024 - -
Bpe11g00561 1277 MobiDBLite consensus disorder prediction 964 1029 - -
Bpe11g00561 1277 CDD PHD3_NSD 350 382 - -
Bpe11g00561 1277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 280 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00561 - - - qsu:112003340 1296.18
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g591 Blo03g00537 . Bda07g00383 . . . . . . . Cma01g01105 . Car01g00978 . . . Cpe02g00796 Bhi09g01710 . . . . . . . . . . . . . . . Cone14ag1189 Cone15ag1208 Lsi02g01869 Csa07g00996 . . . . . . Bpe11g00561 . . . . Cmo01g01151 . . . . . . . . . . . . . . Cla09g02036 Cam09g2125 Cec09g2190 . . . . . . Chy01g01070 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003000 1 4 2 0 1 1 1 1 1 1 1 1 1 0 1 1 1 3 1 1 10 1 1 1 1 1 1 3 1 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00561 Bpe_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.017586