Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe11g00570 ATGGAGTCGGCAATATTAGGTTCGTTGGGTTCTCAGTTTCTGGCGAGAAATCCTCCCCAAGGTACCGTAAAGCTCGGATCTTTCAAGGAAAGATGGAGAAACACCACTTTAAACATGAAAATCCCCAAGTCTAAGCAATTCCCAGGTGTAGATTTAGTTAGCAAGCATGAAAAAGAAGAATGTGAAGAACTGAGAAGCAGCCCAAATCAGATCGGTACAGAAATTAGTCAATGCTACGAACTTATAAAGCGACTTGGAAGAGGAGTTGTCTATCTGGGCTCTTCCAGGACTAAGCCAGATCATTCTCATTACATACAAGCGTTTGAATTGAGCAGAGAGATTGCCTATCTGTTAGATTGTACATCGTGGACTGGTGCTGGTCCAGGCCTGATGGATGCTGCTACTCAGGGTGCGTTGAAAGCCGGGAAGTTGGTTGGTGGACTAAAGATTGGCAGAGAAGCAGGCGAATGGACAGCGTCGGAATTCCATTCGTATCTTCCATCAGAAACTTACCATACTTGCAGGTTTTTCTCTGCAAGAAAGCATGGACTTGTTGATGCTGCAATGAGAAGTTGTTCTTCAGACAGAACTGCCATAGTAGCTCTCCCTGGTGGGACTGGTACTTTGGATGAAATTTTTGAAATTTTCTCACTGATTCAACTTAACCGGATTGGTTCCAACTTTCCCGTTCCCTTCTTGCTGATGAACTACGATTCCTACTACTCGAAGCTGCTAGACTTTCTTCGCGACTGTGTGAGCTGGGGAACTCTCGCTGAAACCGAGCTCGAATCTATGTGGAAAGTCTGTGAGAGTAACTCTGAAGCTTTGACGTATTTGGCTGAGTTTTATGACATTTCTCTTCGTGACAAAGGAATATACGAGTGA 885 44.41 MESAILGSLGSQFLARNPPQGTVKLGSFKERWRNTTLNMKIPKSKQFPGVDLVSKHEKEECEELRSSPNQIGTEISQCYELIKRLGRGVVYLGSSRTKPDHSHYIQAFELSREIAYLLDCTSWTGAGPGLMDAATQGALKAGKLVGGLKIGREAGEWTASEFHSYLPSETYHTCRFFSARKHGLVDAAMRSCSSDRTAIVALPGGTGTLDEIFEIFSLIQLNRIGSNFPVPFLLMNYDSYYSKLLDFLRDCVSWGTLAETELESMWKVCESNSEALTYLAEFYDISLRDKGIYE 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4375596 4377470 + Bpe003936.1 Bpe11g00570 110715

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe11g00570 294 Gene3D - 67 290 - -
Bpe11g00570 294 PANTHER EXPRESSED PROTEIN 1 288 - -
Bpe11g00570 294 SUPERFAMILY MCP/YpsA-like 77 279 - -
Bpe11g00570 294 Pfam Possible lysine decarboxylase 131 278 IPR031100 -
Bpe11g00570 294 PANTHER EXPRESSED PROTEIN 1 288 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe11g00570 - - - pxb:103928129 384.415
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe11g00570 Bpe-Chr11:4375596 Bpe02g00355 Bpe-Chr2:2312254 5.16E-09 dispersed
Bpe11g00570 Bpe-Chr11:4375596 Bpe04g01497 Bpe-Chr4:21525242 4.35E-09 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g602 Blo03g00529 . Bda07g00392 . . . . . . . . Cma09g00983 . Car09g00894 Sed04g3681 Cpe06g00794 . Bhi09g01725 Tan01g3151 Cmetu01g1653 . . Mch11g1237 . . . . . . . . . Cone9ag0035 . . Lsi02g01861 Csa07g00980 . . . . . . Bpe11g00570 . . Bma14g00309 . . Cmo09g00985 . . . . . . . . . . . . . Cla09g02045 Cam09g2133 Cec09g2198 . . . . . . Chy01g01078 Cme01g00966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010339 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe11g00570 Bpe_Chr11 FPKM 14.726958 13.790467 8.643183 9.491618 11.462258 11.481205 13.043318 11.561459 11.618502 13.205163